Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 159 5e-34 >seq5 Length=14578851 Score = 159 bits (176), Expect = 5e-34 Identities = 316/467 (68%), Gaps = 3/467 (1%) Strand=Plus/Minus Query 75367 CTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACC 75426 |||||||| || || |||| || | ||||| || ||||| | |||||||| || Sbjct 9912589 CTTATCCACGGTAAATTGAACGGCGTTGACAGCTGGCTTGGTACGCAAGTAGTACATTCC 9912530 Query 75427 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGG 75486 ||| || || ||| ||||||||||||| ||||| ||| | || || || || Sbjct 9912529 AGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATTGATGTGATGGCGGCGTAGCTTGG 9912470 Query 75487 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 75546 | ||| || ||||| || | ||||| |||||||||||| ||||| | ||| || || Sbjct 9912469 CTTGGCCATGTGAATGTTGAGTGACTGGGATTGATCGATGAATGCTCCACGATCGGCAGC 9912410 Query 75547 CATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATC 75606 ||| | ||||| ||| || | || ||||| | || | ||| | |||||||| Sbjct 9912409 CATCTCGATAATCTCCTTCTGTGAGATCTCCCAGACGGTGAGGTAAAGCTCCTTGATATC 9912350 Query 75607 ATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGAT 75663 ||||||| || | || ||||| ||||| | | || | ||||| || Sbjct 9912349 GTCTGGAATTCCTGGGATGTTCTGAATCGATCCATTGTTGGCAATGAGGCGGTTCTTCAT 9912290 Query 75664 CTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTG 75723 |||||| |||||||| ||||||| ||| | | || | || || || || ||||| Sbjct 9912289 CTCATCGGTCCACAATCCTCTCTCGACCAAATCCTTCAGCATGTGTGGGTTGACGATTTG 9912230 Query 75724 AAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 75783 || || || || | || | |||| ||| || || ||| ||||| || | ||||| Sbjct 9912229 GAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTCGAGGTGTATGGCTCAATCGATTC 9912170 Query 75784 ATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCA 75830 |||||||| | || ||||| || |||||||| ||||| || |||| Sbjct 9912169 GTTGTTTCCGAGGATCTGAGCGGTGGAAGCAGTTGGCATTGGAGCCA 9912123 Score = 93.3 bits (102), Expect = 6e-14 Identities = 287/434 (66%), Gaps = 9/434 (2%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||||| | |||||| ||| | || || ||||||| | |||||||| || || || Sbjct 9911956 GATCCCTCATATGTAGAGTATGGTCCATCTCTTTCAGCCAACTCGCAACTAGCTTCCAAT 9911897 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCT-TGCGCT-TCAAGACTAT 76067 ||| |||| || || || ||||| || |||| || |||||| || || | ||| | | Sbjct 9911896 GCAGCGTAGTAGATGGTCTCGAAGATTCTCTTGTTGAGATCTCTGGCCTGTGGAGA-TGT 9911838 Query 76068 CAAAAGGATAATGTAAAAGAATAAATGCA-TCTGCTAGTCCCTGAACTCCAATACCAATA 76126 || |||||| | | | || || ||| || || ||||| |||||||| | ||| || Sbjct 9911837 GAAT-GGATAACGCATCAACATGAA-GCAGTCAGCGAGTCCTTGAACTCCGAGACCGATT 9911780 Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 || | ||| | | | || || | ||| ||| ||| || ||||| || | || || Sbjct 9911779 GGACGATGGCGCATGTTCGAGTTGCGAGCCTCTTCAATTGGATAATAGTTGACGTCAATG 9911720 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT 76246 || || || ||||| | | || || ||| || || |||| ||| || || Sbjct 9911719 ATCTTGTTCAGATTCTTTGTTATGACCTTGGTCACCTCAGCGAGCTTGACAAAGTCGAAC 9911660 Query 76247 TTTCCATC--TA-TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACC 76303 ||| || || |||| || || | ||| ||||| || ||||| ||||| || ||| Sbjct 9911659 TTTTTGTCGTTAGTCACGAAACGGTTCAAAGCAATAGAAGCGAGATTGCAAACAGCAACC 9911600 Query 76304 TCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCA 76363 || | | | | || | || ||||| ||||| | || |||||||||||||| Sbjct 9911599 TCGTCTGGAGCAGAGTACTCGATAATCTCAGTGCACAAGTTGGAGCACTTGATAGTTCCC 9911540 Query 76364 AGATTTTGTTGGTT 76377 | ||||| ||||| Sbjct 9911539 AAGTTTTGCTGGTT 9911526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712931129413440