Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5 159 8e-34 >seq5 Length=14578851 Score = 159 bits (176), Expect = 8e-34 Identities = 171/224 (76%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | |||||||| || || || ||||||||||| || | | |||| Sbjct 4173957 CTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTT 4173898 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| ||||||||||| || ||||||||||| | | ||||| Sbjct 4173897 CTTCCATCCTCAAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTC 4173840 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| ||||| ||||| ||||||| |||| | | | || ||| ||| ||||| | Sbjct 4173839 CCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCA 4173780 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || ||||| || ||||| ||||| ||||||| |||||| Sbjct 4173779 AAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4173736 Score = 158 bits (174), Expect = 3e-33 Identities = 165/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||||||||| ||||||||||||||||||| | ||| | ||||| Sbjct 4175006 AGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCC 4174947 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||||||||| || ||||||||||| | | ||||| ||||| | Sbjct 4174946 TCGAGTTGCTTT--CCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGT 4174889 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||||||| |||| | | |||| ||| || ||||| || || || | Sbjct 4174888 CTTGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCG 4174829 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || | ||||| ||||||| ||||||| Sbjct 4174828 TCTTTCCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Score = 149 bits (164), Expect = 1e-30 Identities = 163/215 (76%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || ||||| ||||||||||||||||| | | ||||| |||||| Sbjct 4175462 AGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGACAGGGTTCTACCATCT 4175403 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| || ||||| ||||| | | |||||||||||| | Sbjct 4175402 TCCAATTGCTTT--CCGGCGAAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTAT 4175345 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || || | || | | |||| ||| || ||||| ||||| || | Sbjct 4175344 CCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGG 4175285 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || |||||||| ||||||| ||||||| Sbjct 4175284 TCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Score = 140 bits (154), Expect = 7e-28 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | || ||||| ||||| || ||||||||||| || | | |||| Sbjct 4173729 CTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTT 4173670 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 || ||||| || || ||||| ||||||||||| || ||||||||||| | | ||||| Sbjct 4173669 CTTCCATCCTCAAGCTGCTTT--CCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTC 4173612 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 | ||||| ||||| ||||| ||||||| |||| | | | || ||| ||| || || | Sbjct 4173611 CCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCA 4173552 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || | || || ||||||| ||||| Sbjct 4173551 AGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCAT 4173509 Score = 127 bits (140), Expect = 5e-24 Identities = 156/210 (74%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| |||| | ||| | ||||| || | Sbjct 1551617 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGA 1551675 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| | || |||||||| | | ||||||||||| ||||| Sbjct 1551676 GTTGCTTT--CCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTG 1551733 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| |||| | | | || || ||| ||||| || | ||| || || Sbjct 1551734 GATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTT 1551793 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| |||||||| ||||||| ||||| Sbjct 1551794 ACCCGTCAGAGTCTTGACGAAGATTTGCAT 1551823 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || |||||||| || ||||| |||||||||||||| |||| ||||| | || || Sbjct 4175966 GAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTC 4175907 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || || ||||| | | ||||||||| | | |||||||||||| Sbjct 4175906 CTCGAGCTGCTTT--CCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTG 4175849 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || || || |||||| |||| | |||| ||| || ||||| | ||| || Sbjct 4175848 TCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATG 4175789 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | |||||| ||||||| ||||| Sbjct 4175788 GTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 109 bits (120), Expect = 1e-18 Identities = 159/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||| || | || ||||| ||||| || ||||||||||| || | | || Sbjct 4175243 CTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTA 4175184 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | ||||| || || ||||| || |||||||| | | ||||| || | | ||||| Sbjct 4175183 CGTCCATCCTCAAGCTGCTTT--CCAGCGAAGATCAATCGTTGCTGATCTGGTGGGATTC 4175126 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| ||||| || || |||||| |||| | |||| ||| || || || | Sbjct 4175125 CTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTCGACCTCGA 4175066 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || || || ||||| ||||||| |||||| Sbjct 4175065 GGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| | || ||||| || | | ||||||||||| ||||| ||||| Sbjct 4174107 TTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTA 4174048 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| || || ||||| || || || ||||| || ||| Sbjct 4174047 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4173988 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||||| ||||||| Sbjct 4173987 AGTGTCTTGACGAAGATCTGCATT 4173964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153815374518257