Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq5 206 6e-48 seq9 113 9e-20 >seq5 Length=14578851 Score = 206 bits (228), Expect = 6e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| |||||||| || ||||| | || || |||||||||||||| || | Sbjct 4175022 ACCTCCACGGAGGCGAAGAACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCGGA 4174963 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| ||||| || ||||| ||||| | | || ||||| || Sbjct 4174962 AAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGG 4174903 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||||||||| ||||| ||||| || | ||||| ||||||||||||||||| Sbjct 4174902 AATTCCCTCCTTGTCTTGAATCTTGGCTTTGACATTCTCGATGGTGTCCGAAGCTTCGAC 4174843 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||| ||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 4174842 TTCGAGGGTGATCGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCATT 4174794 Score = 178 bits (196), Expect = 3e-39 Identities = 187/245 (76%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 282855 TAAAAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTT 282914 ||||||| |||| |||| ||||| || || || |||| || | ||| || || Sbjct 1551581 TAAAAAACGAAACA--AACCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTC 1551638 Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 |||||||||||||| | || || || |||||||| ||||| || ||||| |||||||| Sbjct 1551639 TGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAT 1551698 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 | ||| ||||| ||||| || ||||||||||||||||| || || || | ||||| Sbjct 1551699 CTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATG 1551758 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 || || || || ||||||||||| | || ||||||||||||| |||||| ||||| || Sbjct 1551759 GTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATT 1551818 Query 283095 TGCAT 283099 ||||| Sbjct 1551819 TGCAT 1551823 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| | || || ||||||||||||||||| | Sbjct 4175980 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 4175921 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| || ||||| || || || || ||||||||||| || || ||||| || Sbjct 4175920 AAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGG 4175861 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || || | ||||| |||||||||||||||||| Sbjct 4175860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACT 4175801 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || ||||||||||| ||||| || ||||| Sbjct 4175800 TCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || ||||| | || || |||||||||||||| || | Sbjct 4175478 ACCTCCACGGAGACGAAGGACAAGATGGAGTGTTGACTCCTTTTGGATGTTGTAATCCGA 4175419 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || | ||| || ||||| ||||| | | |||||||| || Sbjct 4175418 CAGGGTTCTACCATCTTCCAATTGCTTTCCGGCGAAGATGAGTCTCTGTTGGTCTGGTGG 4175359 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| || |||||||| || || ||| | ||||| ||||| ||||||||||| Sbjct 4175358 GATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTTTCGATGGTGTCAGAAGCTTCGAC 4175299 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||||||||| ||||| || |||| |||||| ||||| ||||||||| Sbjct 4175298 TTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAGATCTGCATT 4175250 Score = 159 bits (176), Expect = 7e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || || || |||||||| || || || || || ||| Sbjct 4175213 TCCTTCTGGATGTTGTAGTCCGAGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAG 4175154 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||| ||||| || || || || || ||||||||||||||||| || || || | Sbjct 4175153 ATCAATCGTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTC 4175094 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || |||||||||||||||||||| ||||| ||||| ||||| || || | ||||| ||| Sbjct 4175093 TCAATAGTGTCCGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACG 4175034 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 4175033 AAGATCTGCAT 4175023 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 ||||| ||||||| || | || ||| || |||||||||||||| | ||| || | Sbjct 4173954 AGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTT 4173895 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 |||||||| || || || ||||| ||||| | | || ||||| || || |||||| Sbjct 4173894 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCC 4173835 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 ||||||||||| || ||||| || | ||||| || || ||||| |||||||| | |||| Sbjct 4173834 TTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTATCGGAAGCCTCGACTTCCAAAGTG 4173775 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || || || || | ||||| ||||| || |||||| Sbjct 4173774 ATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCATT 4173736 Score = 143 bits (158), Expect = 6e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || || ||||| || || ||||| || || || |||||||| |||||||| Sbjct 4174663 TTACCAGCGAAAATCAATCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTG 4174604 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| || | ||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct 4174603 GCTTTGACATTCTCGATAGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTC 4174544 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 || ||||| ||||| ||||||||| Sbjct 4174543 AATGTCTTGACGAAGATCTGCATT 4174520 Score = 136 bits (150), Expect = 8e-27 Identities = 114/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||||||||| | |||||| || || || || |||||||| |||||||| ||| Sbjct 4175618 CCAGCAAAGATCAATCTTTGTTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCT 4175559 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || ||||||||||||||||||||||| | |||||| ||||| || |||||| Sbjct 4175558 TTGACATTCTCAATAGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAA 4175499 Query 283080 GTCTTAACGAATATCTGCAT 283099 ||||| ||||| || ||||| Sbjct 4175498 GTCTTGACGAAGATTTGCAT 4175479 Score = 123 bits (136), Expect = 5e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||| || | |||||||| || || || ||||| ||| Sbjct 4173699 TCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCAAGCTGCTTTCCGGCGAAG 4173640 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | | || ||||| || || ||||||||||||||||| || ||||| || | Sbjct 4173639 ATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 4173580 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| || || ||||| || || || | ||||| || || || ||||| || || ||| Sbjct 4173579 TCGATGGTATCGGAAGCCTCCACCTCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACG 4173520 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 4173519 AAGATTTGCAT 4173509 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||||||||| | ||| || || ||||| || |||||||||||||| || Sbjct 4174107 TTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTA 4174048 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 || || || | || || ||||| || |||||||||||||| ||||| || || || || Sbjct 4174047 GCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGTG 4173988 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||||| ||||| ||||||||| Sbjct 4173987 AGTGTCTTGACGAAGATCTGCATT 4173964 Score = 116 bits (128), Expect = 8e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || || || ||||| || || || || ||||| || |||||||| |||||||| Sbjct 4174389 TTACCAGCGAAAATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTG 4174330 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||| ||| | || ||||||||||| ||||| || || |||||||| ||||| || || Sbjct 4174329 GCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCAAGAGTGATAGTCTTTCCAGTA 4174270 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | ||| || ||||| ||||||||| Sbjct 4174269 AGAGTTTTCACGAAAATCTGCATT 4174246 >seq9 Length=17485439 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 43984 CAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGACT 44043 ||||||||||||||||||||||||||||| || || |||||||| |||| |||| |||| Sbjct 4621120 CAAGCGTCGACATCGGAGTTGTACGGAAAAGTACAAGAGATTCCACAAAGTGAAAAGACT 4621061 Query 44044 CCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTTGTAAA 44103 ||||| ||||| | || |||| ||| || || | |||| || |||||| | Sbjct 4621060 CCGTTCTATCCAAGATCACCGTATGCTGTTGCTAAAATGTATGGATACTGGATTGTTGTC 4621001 Query 44104 AATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACGAAAGT 44163 || || || ||| | ||| ||||||| || ||| ||| |||||||| || ||| Sbjct 4621000 AACTACCGAGAGGCTTATAAAATGTTCGCATGCAATGGAATTCTCTTCAATCATGAGAGT 4620941 Query 44164 CC 44165 || Sbjct 4620940 CC 4620939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046734278036018