Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5 125 5e-24 >seq5 Length=14578851 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| || |||||||||||||||||| |||| | ||| |||| || Sbjct 4175962 ACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAAGTGCGTCCGTCCTCG 4175903 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||| |||||||| |||| || | |||||||| ||| Sbjct 4175902 AGCTGCTTTCCAGCAAAGATCAAGCGCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGG 4175843 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | | ||| || |||| || || |||||| Sbjct 4175842 ATCTTGGCCTTGACATTCTCGATTGTGTCCGAAGCTTCGACTTCCAAAGTGATGGTCTTT 4175783 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||||||||| Sbjct 4175782 CCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | ||||| ||| || ||| |||||| ||||||||||| || Sbjct 4175253 CATTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 4175194 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || |||||||| || || |||||||| || |||||||||| Sbjct 4175193 CGAGAGGGTACGTCCATCCTCAAGCTGCTTTCCAGCGAAGATCAATCGTTGCTGATCTGG 4175134 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| ||| | | | || ||||| | | ||| Sbjct 4175133 TGGGATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCAATAGTGTCCGAAGCTTC 4175074 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || |||||||| || || ||||| |||||||| ||||| Sbjct 4175073 GACCTCGAGGGTGATAGTCTTTCCGGTAAGCGTCTTGACGAAGATCTGCAT 4175023 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| ||||||||||| |||| ||| || | || || Sbjct 1551615 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCG 1551674 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| |||||||| | ||||| |||| || | |||||||| || Sbjct 1551675 AGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGAATTCCTTCCTTGTCTTGG 1551734 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || || || | | ||| ||||| Sbjct 1551735 ATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGGAATTGTCTTA 1551794 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 ||||| || ||||| |||||||||||||||| Sbjct 1551795 CCCGTCAGAGTCTTGACGAAGATTTGCATGA 1551825 Score = 109 bits (120), Expect = 4e-19 Identities = 171/240 (71%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | ||||| ||| || ||| |||||| ||||||||||| Sbjct 4173742 TTGCATTCCTCCTCTGAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTA 4173683 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 || | ||||| | | || || |||||||| ||||| ||||| | | |||||| Sbjct 4173682 GTCCGAAAGAGTT--CTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGG 4173625 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 |||| || | || ||||| || || || |||| | ||| | ||||| |||| Sbjct 4173624 TCTGGTGGGATTCCCTCCTTGTCTTGGATTTTG-GCTTTGACATTCTCGATGGTATCGGA 4173566 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | |||||||||| || || || ||||| || | || || ||||||||||||||||| Sbjct 4173565 AGCCTCCACCTCCAAGGTGATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATGAT 4173506 Score = 98.7 bits (108), Expect = 7e-16 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | |||| |||||| || ||||| ||||||||||| || Sbjct 4173967 CATTCCTCCTCTGAGGCGGAGTACCAAGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTC 4173908 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || |||||||| ||||| ||||| | | |||||| ||| Sbjct 4173907 CGAAAGAGTT--CTTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCT 4173850 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | || | || ||||| || || || |||| | ||| | ||||| |||| | Sbjct 4173849 GGTGGGATTCCCTCCTTGTCTTGGATTTTG-GCTTTGACATTCTCGATGGTATCGGAAGC 4173791 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || ||||| ||||| ||||| |||||||||||||| Sbjct 4173790 CTCGACTTCCAAAGTGATGGTTTTTCCAGTGAGTGTCTTGACGAAGATTTGCAT 4173737 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 ||||||||||||||||||||||| || || | || || || ||||| ||||| || Sbjct 4174986 CTCCTTTTGGATGTTGTAATCGGAAAGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAA 4174927 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||| | | |||||| |||| || | || ||||| || ||||| |||| | | Sbjct 4174926 GATGAGTCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTT-GGCTTTGACAT 4174868 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 || | |||||||| | | ||| || || | || ||||||||||| || | ||||| | Sbjct 4174867 TCTCGATGGTGTCCGAAGCTTCGACTTCGAGGGTGATCGTCTTTCCGGTCAATGTCTTGA 4174808 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 4174807 CGAAGATCTGCAT 4174795 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCA 44203 ||||||||||||||||||||| ||| || || | || |||| ||||| ||||| Sbjct 4175442 CTCCTTTTGGATGTTGTAATC--CGACAGGGTTCTACCATCTTCCAATTGCTTTCCGGCG 4175385 Query 44204 AAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAAT 44263 ||||| | | ||| || |||| || | |||||||| ||| ||||| ||| | Sbjct 4175384 AAGATGAGTCTCTGTTGGTCTGGTGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACG 4175325 Query 44264 GTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | |||||||| | | ||| || || | || || |||||||| || || ||||| Sbjct 4175324 TTTTCGATGGTGTCAGAAGCTTCGACTTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTG 4175265 Query 44324 ACGAAGATTTGCAT 44337 |||||||| ||||| Sbjct 4175264 ACGAAGATCTGCAT 4175251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| |||||||||||||| | |||||||||| || | |||||||| || || || Sbjct 4174108 CTTACCGGCAAAGATCAATCTTTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATTTT 4174049 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | | | |||||||||| || ||| || || | || || || ||||| || Sbjct 4174048 AGCCTTGACATTCTCAATGGTGTCGGAGGCTTCGACTTCGAGTGTGATGGTTTTTCCAGT 4173989 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||| ||||| Sbjct 4173988 GAGTGTCTTGACGAAGATCTGCAT 4173965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || || ||||| ||||||||||||| || | |||||||| ||| ||||| Sbjct 4174390 CTTACCAGCGAAAATCAATCGCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTT 4174331 Query 44254 CTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCG 44312 |||| | | || | || ||||| | || ||| ||||| | || || |||||||| | Sbjct 4174330 -GGCTTTGACGTTTTCAATAGTGTCCGAGGCTTCAACCTCAAGAGTGATAGTCTTTCCAG 4174272 Query 44313 TGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| || ||||| Sbjct 4174271 TAAGAGTTTTCACGAAAATCTGCAT 4174247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988789830439