Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5 185 2e-41 seq11 89.7 1e-12 >seq5 Length=14578851 Score = 185 bits (204), Expect = 2e-41 Identities = 165/207 (80%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| |||||||||||||| || ||| || ||| Sbjct 4174798 CAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCGGAC 4174857 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| |||||||| ||||| || ||||| || || |||||||| Sbjct 4174858 ACCATCGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAGCAG 4174917 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || ||||| |||||| | |||||| ||||||| ||| || Sbjct 4174918 AGACTCATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTTTCCGATTACAACATC 4174977 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||||| ||| Sbjct 4174978 CAAAAGGAGTCTACTCTCCATCTCGTT 4175004 Score = 168 bits (186), Expect = 2e-36 Identities = 161/205 (79%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | ||||||||||| |||||| | |||||||| || || Sbjct 4173512 CAAATCTTCGTCAAAACGTTGACAGGAAAAACTATCACCTTGGAGGTGGAGGCTTCCGAT 4173571 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || || ||||| || |||||||| || |||||||| Sbjct 4173572 ACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 4173631 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| || |||||||| |||||| | || || ||| || Sbjct 4173632 AGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAACATC 4173691 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 4173692 CAGAAGGAGTCCACTCTCCA-CTTG 4173715 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || ||||| || ||||| || ||||| ||||| || ||| || ||| Sbjct 4175254 CAGATCTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAAGTCGAAGCTTCTGAC 4175313 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| ||||| || ||||||||||| || ||||| || Sbjct 4175314 ACCATCGAAAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAACAG 4175373 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| || | |||||||| || || || | ||||| ||| || Sbjct 4175374 AGACTCATCTTCGCCGGAAAGCAATTGGAAGATGGTAGAACCCTGTCGGATTACAACATC 4175433 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || |||||||| |||||||| Sbjct 4175434 CAAAAGGAGTCAACACTCCATCTTGT 4175459 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| |||||||| ||||| | || || || || || Sbjct 4173740 CAAATCTTCGTCAAGACACTCACTGGAAAAACCATCACTTTGGAAGTCGAGGCTTCCGAT 4173799 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| || || || ||||| || |||||||| || |||||||| Sbjct 4173800 ACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAG 4173859 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||||||||| ||||| || |||||||| |||||| | || || ||| || Sbjct 4173860 AGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGAAGAACTCTTTCGGACTACAACATC 4173919 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 4173920 CAGAAGGAATCGACTCTTCA-CTTG 4173943 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || || || || || ||||||| || || ||| || Sbjct 1551820 CAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTCCCCTCGAAGTCGAGGCCTCCGAT 1551761 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || ||||| |||||||| || || ||||||||| Sbjct 1551760 ACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAGCAA 1551701 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| || ||||| |||||| | ||||| |||| || ||| || Sbjct 1551700 AGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGACGTACTCTCTCCGACTACAACATC 1551641 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 1551640 CAGAAGGAGTCCACTCTCCA-CTTGGTT 1551614 Score = 149 bits (164), Expect = 2e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || ||||| || ||||| | || || ||| || ||| Sbjct 4175757 CAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCGGAC 4175816 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 4175817 ACAATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAG 4175876 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| |||||||| || ||| | ||| | |||| || ||| || Sbjct 4175877 CGCTTGATCTTTGCTGGAAAGCAGCTCGAGGACGGACGCACTTTGTCCGACTACAACATC 4175936 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| || || || || ||||| ||| Sbjct 4175937 CAAAAGGAGTCGACCCTTCATCTCGTT 4175963 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||||||||| ||| || ||| Sbjct 4175026 CAGATCTTCGTCAAGACGCTTACCGGAAAGACTATCACCCTCGAGGTCGAAGCTTCGGAC 4175085 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct 4175086 ACTATTGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAGCAA 4175145 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| ||||| ||||| || |||||| | || || | || || ||| || Sbjct 4175146 CGATTGATCTTCGCTGGAAAGCAGCTTGAGGATGGACGTACCCTCTCGGACTACAACATC 4175205 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 4175206 CAGAAGGAGTCCACTCTCCA-CTTG 4175229 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || ||||| || ||||| ||| ||| ||| Sbjct 4174250 CAGATTTTCGTGAAAACTCTTACTGGAAAGACTATCACTCTTGAGGTTGAAGCCTCGGAC 4174309 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| ||||| |||||||| |||||||| || || || ||||| Sbjct 4174310 ACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAGCAG 4174369 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | || ||||| || || Sbjct 4174370 CGATTGATTTTCGCTGGTAA 4174389 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || ||||| |||||||||||||| || ||| || ||| Sbjct 4174524 CAGATCTTCGTCAAGACATTGACCGGAAAGACGATCACCCTCGAAGTCGAAGCTTCGGAC 4174583 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 4174584 ACTATCGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAG 4174643 Query 178044 CGACTTATCTTCGCCGGAAA 178063 ||| | || ||||| || || Sbjct 4174644 CGATTGATTTTCGCTGGTAA 4174663 Score = 95.1 bits (104), Expect = 3e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || ||||| || ||||| | || || ||| || ||| Sbjct 4175482 CAAATCTTCGTCAAGACTTTGACCGGAAAGACCATCACTTTGGAAGTCGAAGCTTCGGAC 4175541 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| ||||| |||||||| ||||||||||| || || || ||| Sbjct 4175542 ACTATTGAGAATGTCAAAGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAACAA 4175601 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||| || || Sbjct 4175602 AGATTGATCTTTGCTGG 4175618 >seq11 Length=19495157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 172/254 (68%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 254306 TCTCCCCCATACGGAATGTCAAAAATCCCAAGAACTTTTGTTCGGAGTCTTTGGTCGAAA 254365 ||||| ||||| | |||||| | | || | | ||||| | | |||||||| ||||| Sbjct 12158924 TCTCCACCATAAGCAATGTCGACAGTCTTGATCATTTTTGCTTGAAGTCTTTGATCGAAC 12158865 Query 254366 AGGTCAGATTCCAAAAGTTTTGTTTTGAACTCTGCCGCTCCCGCGATAACAATTCCGAGG 254425 | || |||| |||| || ||||| || || ||| || | | | ||| Sbjct 12158864 ATATCGGATTGACCGAGTTCCGTCTTGAAATCAGCACTTCCAGCAAGGATTAATCCAGAA 12158805 Query 254426 ACGTTGCATTTGTTGTCTTGTATGAAGCATTGGGTTGCGTTCTCTGCGACTTTTCTCAAA 254485 ||| || ||||| | || ||||| || ||||| || |||||||| | | Sbjct 12158804 ACGGTGACTTTGTCATTTTTGATGAACATTTCAACAGCGTTTTCAGCGACTTTGCGAACG 12158745 Query 254486 TAGTTGTGTCTTTTTTCTTTTCGAAGTCTTTCGAACCGGAGGGCTGACTGTCCTCCTCGA 254545 |||||||| | ||||| || ||||| | | ||||| | || ||||||||||||| | Sbjct 12158744 TAGTTGTGACGCTTTTCGTTACGAAGACGAGCAAACCGAACAGCAGACTGTCCTCCTCTA 12158685 Query 254546 CCGTGTTTCTTTGG 254559 |||||||||||||| Sbjct 12158684 CCGTGTTTCTTTGG 12158671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725539830198