Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20briggsae_20[genbank_20GCA_5F000004555.3_202014-07- 02] 367 sequences; 108,384,165 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5 102 8e-17 >seq5 Length=14578851 Score = 102 bits (112), Expect = 8e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| ||||| || || || | Sbjct 4173726 AGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTT 4173667 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| |||||||| || || | ||| ||||| | || | | |||| Sbjct 4173666 CCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCC 4173607 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 ||||| |||||| |||| || | | || ||| | ||||||||||| || Sbjct 4173606 TTGTCTTGGATTTTG-GCTTTGACATTCTCGATGGTATCGGAAGCCTCCACCTCCAAGGT 4173548 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || |||| ||| || ||||| || |||||| Sbjct 4173547 GATAGTTTTTCCTGTCAACGTTTTGACGAAGATTTGCATG 4173508 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||||||||| ||||| ||||||||| Sbjct 1551597 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 1551656 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||| ||||| |||||||| |||| | || ||||| | ||| Sbjct 1551657 AGAGTACGTCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGA 1551716 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||| ||| || ||| | | | || ||| | ||| || Sbjct 1551717 ATTCCTTCCTTGTCTTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAGGCCTCGACT 1551776 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | | || || ||||||||||| ||||| ||||| || |||||| Sbjct 1551777 TCGAGGGGAATTGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATG 1551824 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 41626 TACATCACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTT 41685 ||||| | | || || || ||||| | || ||||| || || |||||| || ||||| Sbjct 4175989 TACAT-ATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTT 4175931 Query 41686 ATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTG 41745 |||||||| | ||||| |||| ||||||||||| || || || |||| |||||| || Sbjct 4175930 GTAGTCGGACAAAGTGCGTCCGTCCTCGAGCTGCTTTCCAGCAAAGATCAAGCGCTGCTG 4175871 Query 41746 GTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCT 41805 ||| | || | | ||||||||| ||| || ||| | | | ||||| Sbjct 4175870 GTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATTGTGTCCGA 4175811 Query 41806 CGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || |||| || || || || || |||| ||||| ||||| || ||||| Sbjct 4175810 AGCTTCGACTTCCAAAGTGATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGCAT 4175754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462301879180400