Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 107 4e-18 seq3 96.9 7e-15 seq2 91.5 3e-13 seq6 89.7 1e-12 seq1 89.7 1e-12 >seq4 Length=17493829 Score = 107 bits (118), Expect = 4e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 61079 TCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAAC 61138 |||| | | ||||||||| ||||| ||| ||||||||||||||||||| ||||| |||| Sbjct 8989418 TCGATTCTATCAAGCATCCACATCCGAATTGTATGGAAAAGTTCAAGAGATTCCACAAAG 8989477 Query 61139 AGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTG 61198 || | |||||| || ||||| | || |||| |||||| || | |||| ||||| Sbjct 8989478 TGAGAAGACTCCATTCTATCCAAGATCTCCATATGCTGTTGCCAAGATGTACGGGTACTG 8989537 Query 61199 GATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAA 61258 |||| | || || || || | || ||||||| || || |||| ||||| Sbjct 8989538 GATTGTTGTTAACTATCGTGAAGCCTACAATATGTTTGCTTGCAATGGAATTTTGTTCAA 8989597 Query 61259 TCACGAGAGTCCCAATAGAGGT 61280 || |||||||| | |||||| Sbjct 8989598 CCATGAGAGTCCAAGAAGAGGT 8989619 Score = 93.3 bits (102), Expect = 9e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||||| || ||||| |||||||||||||||||| ||||||| |||||||||| |||| Sbjct 12594730 TTAAAATGCC-GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCG 12594788 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||| | ||||| Sbjct 12594789 CGGGTTCGAGCCCCGCATTGGGC 12594811 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 5967160 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5967219 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 5967220 CCCGCATTGGGC 5967231 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 15793415 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 15793474 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 15793475 CCCGCATTGGGC 15793486 >seq3 Length=13783801 Score = 96.9 bits (106), Expect = 7e-15 Identities = 226/337 (67%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 230305 GACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTA 230364 ||||| || || |||| | |||| | ||| | || |||||||| || || || || Sbjct 4093892 GACGAAGGACTTCATCGTGATTTCGCCTGTCTTCTCTACTCAAAGCTTCAAAAGAAACT- 4093834 Query 230365 CCATTCGAGACGG--TCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCA 230422 || || | | | || | | ||||| | || || || | | |||| | || ||| Sbjct 4093833 -CACTCAACAACGCATCTACGATATCATCAAGGACGCTGTGGCCATCGAACAAGAATTCC 4093775 Query 230423 TTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACA 230482 | ||| || ||||| | | | |||||||||||| | |||||| |||||||| Sbjct 4093774 TGACTGAGGCACTTCCAGTTGACATGATTGGCATGAACTGTCGTCTTATGTCACAGTACA 4093715 Query 230483 TCGAATTCGTAGCCGACCGCATTT--TTGTTGCACTTGGTTACGAGAAAGTGTACAACTC 230540 |||| || || ||||| | |||| | || | || |||| || || | ||||| || Sbjct 4093714 TCGAGTTTGTCGCCGATC--ATTTGCTCGTCGAGCTCGGTTGTGACAAGCTTTACAAGTC 4093657 Query 230541 TAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGA 230600 ||||| || || | || |||||| || ||| | | || ||||| ||||||||||| Sbjct 4093656 GAAGAATCCATTCGACTTCATGGAGAATATCTCGATCGACGGAAAGACTAACTTCTTCGA 4093597 Query 230601 AAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||| || || ||||| | ||||| |||||| Sbjct 4093596 GAAGCGGGTTTCCGAGTATCAACGTCCTGGAGTGATG 4093560 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 3389537 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3389596 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3389597 CCCGCATTGGGC 3389608 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 3426985 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3426926 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3426925 CCCGCATTGGGC 3426914 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 8473473 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 8473532 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 8473533 CCCGCATTGGGC 8473544 >seq2 Length=15279421 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 11157875 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 11157816 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 11157815 CCCCGCATTGGGC 11157803 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 3439466 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3439407 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3439406 CCCGCATTGGGC 3439395 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 3519322 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3519263 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3519262 CCCGCATTGGGC 3519251 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 3567836 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3567777 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3567776 CCCGCATTGGGC 3567765 >seq6 Length=17718942 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 12106219 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 12106160 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 12106159 CCCGCATTGGGC 12106148 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13655989 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13655930 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13655929 CCCGCATTGGGC 13655918 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13714888 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13714947 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13714948 CCCGCATTGGGC 13714959 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13717195 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13717254 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13717255 CCCGCATTGGGC 13717266 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13730357 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13730416 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13730417 CCCGCATTGGGC 13730428 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13730778 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13730837 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13730838 CCCGCATTGGGC 13730849 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13781640 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13781699 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13781700 CCCGCATTGGGC 13781711 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13782249 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13782308 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13782309 CCCGCATTGGGC 13782320 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 14478949 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 14478890 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 14478889 CCCGCATTGGGC 14478878 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 15241427 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 15241368 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 15241367 CCCGCATTGGGC 15241356 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| ||| |||||||||| Sbjct 13729905 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTCTCGCGGGTTCGAGC 13729964 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13729965 CCCGCATTGGGC 13729976 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACGA 165776 |||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||| | Sbjct 14486276 TAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCCCGCAT 14486217 Query 165777 TGGGC 165781 ||||| Sbjct 14486216 TGGGC 14486212 >seq1 Length=15072434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 6136597 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 6136656 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 6136657 CCCGCATTGGGC 6136668 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 11579778 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11579719 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 11579718 CCCGCATTGGGC 11579707 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 11584194 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11584135 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 11584134 CCCGCATTGGGC 11584123 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 11584787 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11584846 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 11584847 CCCGCATTGGGC 11584858 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 13297745 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 13297686 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 13297685 CCCGCATTGGGC 13297674 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||| ||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 7279427 GCCCGGTTAGCTCAGCCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 7279368 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 7279367 CCCGCATTGGGC 7279356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823905126410