Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 5e-13 seq4 82.4 8e-11 >seq6 Length=17718942 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/184 (72%), Gaps = 5/184 (3%) Strand=Plus/Minus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 |||||| || || ||||||||||||||| ||||| || |||||||||| ||||| || Sbjct 1430814 TCTTTGATATTCGGAAACGCGTTTTTCGAAAAAGTTTGTCTTTCCCTCTATTGATATGTT 1430755 Query 15970 TTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATC--TTAGAGTACCCCAGTTCCGTA 16027 ||||||||||||||| || || | | || || | || ||||| |||| || | Sbjct 1430754 TTCCATAAAATCAAACGGGTTTTTTG-TG-TTGTAGCGTTTGGAGTAACCCAACTCTTCA 1430697 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT- 16086 | | ||| || |||||||| | ||||| |||||| | || ||| ||||| || Sbjct 1430696 AGCAGAAGATCAGCGACAAATTCAACATATTTACACATCATGTGCTGATTCATTCCAATC 1430637 Query 16087 AAGT 16090 |||| Sbjct 1430636 AAGT 1430633 >seq4 Length=17493829 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 15910 TCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATT 15969 |||||| || || ||||||||||| ||| ||||| || |||||||||| ||||| || Sbjct 6253107 TCTTTGATATTCGGAAACGCGTTTTTAGAAAAAGTTTGTCTTTCCCTCTATTGATATGTT 6253048 Query 15970 TTCCATAAAATCAAA 15984 ||||||||||||||| Sbjct 6253047 TTCCATAAAATCAAA 6253033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414355251240