Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 242 4e-59 >seq3 Length=13783801 Score = 242 bits (268), Expect = 4e-59 Identities = 481/705 (68%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 ||| ||||| |||||||| || || | ||| ||||||||| || ||||||||||| Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 54010 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 ||| ||| | ||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 9227096 CCATTCT---TGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAG 9227152 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTT---TCCTGTATTCTTTTTAAGATCGAGGAA 54123 || || ||||||| | ||||||| | ||| || ||||| ||| | || Sbjct 9227153 GAACAGGTCTCTGGCAC---GTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAA 9227209 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 | | | ||||| | ||||| || |||| ||| || | | |||| || |||||||| Sbjct 9227210 CTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTT 9227269 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | ||| || ||||| || || | | |||||| || | || Sbjct 9227270 TCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCC 9227329 Query 54244 ATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTA--AT 54300 || |||| ||||| || || | ||| | || |||| |||| ||||| || | || Sbjct 9227330 GTTAGATGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACAT 9227388 Query 54301 TGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 54360 || || || || || || || |||| || || | || || | || || ||||| || Sbjct 9227389 TG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTA 9227446 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 ||| || || || || |||| | || || || || |||||| || |||| Sbjct 9227447 GATTCCGAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACG 9227506 Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 54480 | ||||||| ||| || | || || || || || || | | || || | || Sbjct 9227507 GCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAG 9227566 Query 54481 ATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 54540 ||| || |||||||| || || ||||| | ||| ||||| | | |||||||| Sbjct 9227567 ATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCAT 9227626 Query 54541 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTC 54600 ||||| ||||| || | || || |||| |||||||| || || | |||||| || Sbjct 9227627 CAACATCTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTC 9227686 Query 54601 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || ||||| || || |||||| |||| ||| |||| || ||||| Sbjct 9227687 CAGTGTTTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTA 9227731 Score = 138 bits (152), Expect = 1e-27 Identities = 317/474 (67%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 52795 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 52854 || ||| |||| |||||||||| | | | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 52855 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACT 52914 ||| || || || || |||||||||| |||||||| ||| | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 52915 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 52974 || | || || || || || | |||||| |||||| ||| | ||||| | || || Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 52975 AGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAA 53033 |||||| | || || ||||||| || || ||||| | || ||||| | ||| | Sbjct 9225785 AGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 53034 TATCTTCTGGAAGG---TTTGTATTCTGAATAGATCCACCATCTACCATAATCCTATTCT 53090 | || ||||| | | || ||||| |||||| | | || | | ||||| Sbjct 9225844 TGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCT 9225903 Query 53091 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 53150 | ||||||||| |||| ||| ||| || ||| | | || | || ||||| || | Sbjct 9225904 TCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAA 9225963 Query 53151 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 53210 || || |||||||| | || | |||| ||| || || || || || || | | Sbjct 9225964 TCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGG 9226023 Query 53211 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 9226024 ATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCA 9226077 Score = 123 bits (136), Expect = 3e-23 Identities = 290/433 (67%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 |||||| | ||||| ||||||||| | | |||||| | ||||||||| || || ||| Sbjct 9226242 GATCCTTCGTATGTCGAGTATGGTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAAT 9226301 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 ||| |||| || |||||||||||||| || || |||||| ||||| | Sbjct 9226302 GCAGCGTAGTAGATGGTTTCGAAGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTG 9226361 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 ||||| ||| | | || || || || | |||||| ||||||| ||||| || Sbjct 9226362 AATGGGTAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGG 9226421 Query 53561 CTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAAT 53619 | ||| | | |||||||| | || || || || | ||||| || || | || ||||| Sbjct 9226422 CGATGGCGCATATTAGAGTTGCGAGCCTCCTCGACT-GGATAGTAGTTGACGTCAATAAT 9226480 Query 53620 TTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--T 53677 ||||| | |||||| || ||||| ||| || |||||||| || || || | Sbjct 9226481 CTTATTCAAATTTCTGGTTATAACTTTAGTCACCTCAGCCAGTTTGACGAAGTCGAACTT 9226540 Query 53678 TGTC-CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTC 53736 | || | | || | || | ||||| || || || || ||||| || | ||| Sbjct 9226541 TTTCTCGGGGGTCACGTAGCGATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTC 9226600 Query 53737 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 53796 || | | | | || | ||| || |||||||| | || ||||||||| ||||| | Sbjct 9226601 ATCTGGAGCAGAGTACTCTATGATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAG 9226660 Query 53797 ATTTTGTTGATTA 53809 |||||| || ||| Sbjct 9226661 ATTTTGCTGGTTA 9226673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 24605 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 24664 |||||| || ||||| || | ||| |||||||| |||||||| |||||||| |||| Sbjct 4094449 CCAATCGTTCATATCCTTTCCAAGATCGACTTCTTCGACTGTCCAGAATGATGCAACTGC 4094508 Query 24665 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 24721 |||||| || | |||||||||||||||| || | ||| || || || |||| ||| Sbjct 4094509 CTTTTTGTAGAAGTTCCAGATGTCATGATGTTTCAGTGGGAAGATGACGAATCGATT 4094565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721548049360