Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 140 3e-28 >seq3 Length=13783801 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || | || || ||||||||| |||| ||||||||| | Sbjct 5942233 AATGCAAATCTTCGTCAAGACTCTTATCGGAAAGACCATCACCCTCGAAGTCGAAGCCTC 5942292 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| | |||| || |||| ||||| || || || || | || | Sbjct 5942293 CGATACCATCGAGAACG-TGAAGGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGATC 5942351 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||||| ||| || || ||||| || |||| |||||||| ||||||| Sbjct 5942352 AGCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACA 5942411 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || ||| | || | || ||||| || || Sbjct 5942412 ACATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5942460 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| | || |||||||| || Sbjct 5941497 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCTTCC 5941556 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| || ||||| || ||||| | || ||| Sbjct 5941557 GACACGATCGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5941616 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| |||| ||| || || ||||| || |||| |||||||| ||||||||| Sbjct 5941617 CAAAGACTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 5941676 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| | || || ||| | || | || ||||| || || Sbjct 5941677 ATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5941723 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| | || ||||||||| | Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || |||| ||||| || || ||||| | || ||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||||||| ||| || ||||| || || |||| || |||||| |||||||||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| | || || ||| | || | || |||| || || Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGG 5943192 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| |||||| | || || ||||| |||||| | || || || || || Sbjct 5940991 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 5941050 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| |||| | || || | ||||| || || || || | || ||| Sbjct 5941051 GATACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941110 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| ||| || || ||||| || |||| |||||||| ||||||||| Sbjct 5941111 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 5941170 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 5941171 ATCCAGAAGGA 5941181 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || ||||||||||| |||| |||||||| | Sbjct 5943472 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCG 5943531 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | || || ||||| ||||| | || ||| Sbjct 5943532 GACACCATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAGGGAATCCCACCAGATCAG 5943591 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || ||||| || || | ||||| || ||| |||||| Sbjct 5943592 CAACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTACAAC 5943651 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||| |||||| | || || ||||| || Sbjct 5943652 ATCCAAAAGGAGTCGACACTTCATCTCGT 5943680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || |||||||| |||| || ||||| | Sbjct 5942737 AATGCAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTC 5942796 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | |||| || || | |||||||| || ||||| | || | Sbjct 5942797 TGACACTATTGAGAACG-TGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATC 5942855 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | |||| ||| || || || || || || | || ||||| ||||||| Sbjct 5942856 AGCAACGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACA 5942915 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | ||||||||||| | || || ||| | ||| Sbjct 5942916 ATATCCAGAAGGAATCAACCCTCCATTTGGTG 5942947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219154918320