Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 >seq3 Length=13783801 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||||||||| || ||||| ||||| ||||| ||||| || || ||||| Sbjct 5941581 AAGATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGACTTATCTTCGCCGGAAAG 5941640 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | ||||| | || || | || || || || || || ||||||||| | ||| Sbjct 5941641 CAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAATCAACTCTTCAT 5941700 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| | ||||| |||| ||||| Sbjct 5941701 TTGGTTCTCCGTTTGAGAGGAGGTAT 5941726 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | ||||| || ||||| || || || || | ||| | ||||| Sbjct 5942737 AATGCAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTC 5942796 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| || | || || || ||||| ||||||||||| ||||| ||||| Sbjct 5942797 TGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCA 5942856 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || || || ||||| ||| | |||||| | || || | || || || Sbjct 5942857 GCAACGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACAA 5942916 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | |||||||| | ||| | |||| ||||| Sbjct 5942917 TATCCAGAAGGAATCAACCCTCCATTTGGTGCTCCGTCTCAGAGGAGGTAT 5942967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455933897600