Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 131 1e-25 >seq3 Length=13783801 Score = 131 bits (144), Expect = 1e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||| ||||| ||||| |||||||||||| | |||||| |||||||||||| ||||| Sbjct 5943669 TGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTCGAGCTGCTTTCC 5943610 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| |||| | ||| |||||||| || || || |||||||| || ||||| ||| Sbjct 5943609 AGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGATTTTGGCTTT 5943550 Query 118661 AACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 || | || | |||||||| ||| |||||||||| || | ||||| || |||| || Sbjct 5943549 GACATTCTCAATGGTGTCCGAAGCT-TCGACCTCGAGAGTGATGGTTTTTCCAGTCAAAG 5943491 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || || || |||||||| Sbjct 5943490 TCTTGACGAAGATCTGCAT 5943472 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||||| || || || |||||||| || || ||||| |||||| Sbjct 5941199 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCG 5941140 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| ||||||||||||||||||| || || || || ||||||||| Sbjct 5941139 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 5941080 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | ||||| ||| || | ||| ||||| | ||| | ||||| Sbjct 5941079 ATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTT 5941020 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| ||||| || || || |||||| Sbjct 5941019 CCAGTCAACGTTTTGACGAAGATTTGCATG 5940990 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| ||||| |||||||||||| | ||| || ||||||| Sbjct 5942214 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTCG 5942155 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| || |||| | |||||| ||||| || || || || ||||||||| Sbjct 5942154 AGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGG 5942095 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||| | ||| || ||||| | || | || || Sbjct 5942094 ATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCT-TCAACCTCAAGAGTAATAGTCTT 5942036 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || || || |||||||| Sbjct 5942035 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45074 GAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGA 45133 || || ||||||||||| ||||| | ||||||| || || | || | || Sbjct 4093802 GACGCTGTGGCCATCGAACAAGAATTCCTGACTGAGGCACTTCCAGTTGACATGATTGGC 4093743 Query 45134 ATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAG 45193 |||||| | | ||| | ||||||| |||||||||||||||| | | |||||| || Sbjct 4093742 ATGAACTGTCGTCTTATGTCACAGTACATCGAGTTTGTCGCCGATCATTTGCTCGTCGAG 4093683 Query 45194 TTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCG 45253 | | | |||| | ||| | | |||| |||||||| || ||| | ||||| ||| Sbjct 4093682 CTCGGTTGTGACAAGCTTTACAAGTCGAAGAATCCATTCGACTTCATGGAGAATATCTCG 4093623 Query 45254 TTGGAGGGCAAAACTAAtttttttGAGAAACGCGT 45288 | || || || ||||| || || ||||| || || Sbjct 4093622 ATCGACGGAAAGACTAACTTCTTCGAGAAGCGGGT 4093588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830362988844