Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=13783801 Score = 107 bits (118), Expect = 2e-18 Identities = 220/322 (68%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 || || || || ||| ||| ||||||||||||||||| || || || | ||| || || Sbjct 4093958 ATGAGCTCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATC 4094017 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 | |||||||||||| ||||| ||||||||||| || || || || || | || ||| Sbjct 4094018 GAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCA 4094077 Query 14360 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14419 | ||||| || || |||| ||| ||||| |||||| |||| || || || || Sbjct 4094078 GCGAACGAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATG 4094137 Query 14420 AAATCCATTGTTTCAATAGCATT-AAATAAATG-TTCCTTCTCTTTAGTACTTGAAATGT 14477 || || | |||| || || ||| | || ||| ||| | | | | | ||| | Sbjct 4094138 AACTCGAACTCATCAACGGCGTTGAAAAGAGTGTTTCGTTCCGTCTCAT-CACG-AATAT 4094195 Query 14478 ATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAAC 14537 | || ||||| || ||||| || || || ||||| || || || ||||| || | Sbjct 4094196 AAGTCTCAATCAGCTTCGAGTACATCTCTGAATGAATGTTCTCAATGGCAATCTGGAATC 4094255 Query 14538 CATAAAAACATCTAGCTTCTGA 14559 | || ||| | | |||||||| Sbjct 4094256 CGTAGAAAAACCGTGCTTCTGA 4094277 Score = 86.0 bits (94), Expect = 6e-12 Identities = 166/244 (68%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 |||||| || ||| | || || ||||||||||| || || || | || ||||| || Sbjct 4093575 TTGATACTCGGAAACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTC 4093634 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 ||| || || |||||||| | ||| | | | || |||||||| || || | || || Sbjct 4093635 CATGAAGTCGAATGGATTCTTCGACTTGTAAAGCTTGTCACAACCGAGCTCGACGAGCAA 4093694 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || | ||||| || || || ||||| | | ||| ||||| || || | | Sbjct 4093695 ATGATCGGCGACAAACTCGATGTACTGTGACATAAGACGACAGTTCATGCCAATCATGTC 4093754 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 || |||| | | || | ||||||| ||| || | |||||| || || || || || Sbjct 4093755 AACTGGAAGTGCCTCAGTCAGGAATTCTTGTTCGATGGCCACAGCGTCCTTGATGAT-AT 4093813 Query 14155 CGTA 14158 |||| Sbjct 4093814 CGTA 4093817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345557794760