Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 179 3e-40 seq6 96.9 3e-15 seq4 93.3 4e-14 >seq3 Length=13783801 Score = 179 bits (198), Expect = 3e-40 Identities = 435/652 (67%), Gaps = 9/652 (1%) Strand=Plus/Plus Query 23331 TTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTT 23390 |||| || || || || || ||||||| ||||| || ||||| ||||| |||||| | Sbjct 9227102 TTGA-TCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAACAGGT 9227160 Query 23391 CGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGT 23450 | | ||| || |||| || || |||||||| | | | ||| || || | | Sbjct 9227161 CTCTGGCACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCGAAGATAT 9227220 Query 23451 CCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGAT 23510 | || ||||| ||||| ||||||| ||||| || || || | || || || || |||| Sbjct 9227221 CGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCTCCTTGAT 9227280 Query 23511 CGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGC 23570 | || ||||| || || || ||||| || | ||||| || | ||| ||||| || | | Sbjct 9227281 CAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTTAGATGTTC 9227340 Query 23571 CGCCTACGCCCGCCA-CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 | || || | ||| || || | || |||| |||||||| | || || || Sbjct 9227341 CATTAGTTCCAGCGATCACA-GATCCAGTGGCGCGAATTTTGTGAACATTGAGTCCGATT 9227399 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 |||||| | ||| || || | || || || |||| || |||||||| || ||| Sbjct 9227400 CCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCCGAGAATG 9227459 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 ||| || | | | | | ||| || |||||||| || | ||| | | || Sbjct 9227460 GAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGAC--GGCAT-GTTCCC 9227516 Query 23750 GA---GAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTG 23806 || ||| || || ||| || || || | ||| | | |||||| ||||| || || Sbjct 9227517 GAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATAGGTC 9227576 Query 23807 TCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTAT 23866 ||||| |||| | ||| || ||||| || || || || | || ||||||| ||| | Sbjct 9227577 TCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACATCTGC 9227636 Query 23867 TGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTA 23926 || || | |||||| | | ||| || |||| || || ||||| | || ||||| Sbjct 9227637 TGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCCAGTGTTTTG 9227696 Query 23927 AATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 ||||| |||||| ||| | |||||||||||| || ||||| ||||||| Sbjct 9227697 AATCCGAAATAGGTGTAGGAATAGTCACGATCGTAGACGATGGCGGAATTCA 9227748 Score = 125 bits (138), Expect = 6e-24 Identities = 315/476 (66%), Gaps = 2/476 (0%) Strand=Plus/Plus Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 |||| ||||| || || || | || || | || || ||||| || | ||| ||||| | Sbjct 9225607 TCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACATTC 9225666 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | ||||| || ||| ||||||| |||| ||||| || || || | | || || | Sbjct 9225667 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCTTG 9225726 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || | |||||| | || | || || ||||| || | ||||| ||||| || | Sbjct 9225727 GCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGCAG 9225786 Query 22284 CCATATTTATCAATGTACGCATC-GACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 |||| | || ||||| | || || ||||| || || || |||| | |||| Sbjct 9225787 CCATCTCAAT-AATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGATG 9225845 Query 22343 TCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTA 22402 || | || || || || | || | ||| || || ||| || | ||| || Sbjct 9225846 TCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCTTC 9225905 Query 22403 ATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACT 22462 ||| ||| ||||||| || | | |||||| |||| || ||| | ||||| | Sbjct 9225906 ATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAATC 9225965 Query 22463 TGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGAT 22522 || || || || || | || ||||| ||| ||||| || ||| | || |||| ||| Sbjct 9225966 TGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGGAT 9226025 Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 ||||||||||| || || ||||| || ||||| || ||||| || |||| ||| || Sbjct 9226026 TCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCAGAAG 9226081 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||| || || |||| || ||||| |||||| | || || || Sbjct 5940986 CAATCATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGG 5941045 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | |||||| |||||| | || ||||||||||| | || || | Sbjct 5941046 CTTCCGATACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAG 5941105 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 | ||||||||||| || ||||| || || ||| | || ||| || || || | Sbjct 5941106 ATCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACT 5941165 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | ||||| || || ||||| |||||||| |||| ||| | || || || || Sbjct 5941166 ACAACATCCAGAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTAGAGGAGG 5941217 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||||| | || || || |||||| |||| || ||| | ||| Sbjct 5942234 ATGCAAATCTTCGTCAAGACTCTTATCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5942293 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||||||| | || || || ||| Sbjct 5942294 GATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCAG 5942353 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || |||||||| || ||| | |||||| || | || || ||| Sbjct 5942354 CAACGTCTCATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACAAC 5942413 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||||||| |||| || | |||| || |||| Sbjct 5942414 ATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGGTA 5942462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 57538 GATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAG 57597 |||| ||||| || || | || ||| ||||| |||||| | ||||||||||||| | Sbjct 4094561 GATTCGTCATCTTCCCACTGAAACATCATGACATCTGGAACTTCTACAAAAAGGCAGTTG 4094502 Query 57598 CATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCC 57657 |||| || ||||| ||||||||||| || || |||||| ||| ||||||||| Sbjct 4094501 CATCATTCTGGACAGTCGAAGAAGTCGATCTTGGAAAGGATATGAACGATTGGGAGAAGA 4094442 Query 57658 TCAAAGAATCTGA-GAGAAAT--TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCG 57714 | || | ||| ||| ||| || ||| | | | || || || |||||||| | Sbjct 4094441 TGAATG---GTGACGAGCAATACTTCATTTCTCGGATCCTTGCCTTCTTTGCCGCATCGG 4094385 Query 57715 ATGGTATTGTTAACGAGAATTTGGT 57739 | || ||||| || ||||| ||||| Sbjct 4094384 ACGGAATTGTCAATGAGAACTTGGT 4094360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || ||||| | || || ||| | || Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || ||||||||||| | || || || ||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || ||||| | |||||| | || | ||| || ||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||||||||| |||| || | ||||| || |||| Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGGTA 5943194 >seq6 Length=17718942 Score = 96.9 bits (106), Expect = 3e-15 Identities = 219/325 (67%), Gaps = 12/325 (4%) Strand=Plus/Plus Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||| ||| | || | ||||||||||| || | | |||| | || ||| ||||| Sbjct 1430494 GACGAAGGTTTGCACAGAGATTTTGCGTGTCTTCTCTTCTCTAAACTTATCAGGAAACC- 1430552 Query 58155 ACGCGGGATCGC--ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 ||| | |||| ||| || ||||||| |||| | || | | ||| | || |||| Sbjct 1430553 -CGCAGAGTCGCGCATCACAGAAATTATCAACGAGTCCGTGTTGGTTGAACAAGATTTTG 1430611 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | ||| |||| || | || | || ||||| | | |||||| || || Sbjct 1430612 TTCGAGAATCCCTGCCCACAAACTTGATTGGAATGAATCAGCACATGATGTGTAAATATG 1430671 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT----TACAAC 58328 |||| ||||| || || ||| |||| ||| | | || | | || |||||| Sbjct 1430672 TTGAATTTGTCGCTGAT---CTTCTGCTTGAAGAGTTGGGTTA-CTCCAAACGCTACAAC 1430727 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 || ||||| ||||||||||||||| | || || | ||||| ||||||||||||||| Sbjct 1430728 ACAAAAAACCCGTTTGATTTTATGGAAAACATATCAATAGAGGGAAAGACAAACTTTTTC 1430787 Query 58389 GaaaaaaaaGTTAGCGAATATCAAA 58413 |||||| ||| ||||||||||| Sbjct 1430788 GAAAAACGCGTTTCCGAATATCAAA 1430812 >seq4 Length=17493829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 218/325 (67%), Gaps = 12/325 (4%) Strand=Plus/Plus Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||| ||| | || | ||||||||||| || ||| |||| | || ||| ||||| Sbjct 6252787 GACGAAGGTTTGCACAGAGATTTTGCGTGTCTTCTGTTCTCTAAACTTATCAGGAAACC- 6252845 Query 58155 ACGCGGGATCGC--ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 ||| | |||| ||| || ||||||| |||| | || | | ||| | || |||| Sbjct 6252846 -CGCAGAGTCGCGCATCACAGAAATTATCAACGAGTCCGTGTTGGTTGAACAAGATTTTG 6252904 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 | ||| |||| || | || | || ||||| | | |||||| || || Sbjct 6252905 TTCGAGAATCCCTGCCCACAAACTTGATTGGAATGAATCAGCACATGATGTGTAAATATG 6252964 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT----TACAAC 58328 |||| ||||| || || ||| |||| ||| | | || | | || |||||| Sbjct 6252965 TTGAATTTGTCGCTGAT---CTTCTGCTTGAAGAGTTGGGTTA-CTCCAAACGCTACAAC 6253020 Query 58329 ACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTC 58388 || ||||| | ||||||||||||| | || || | ||||| ||||||||||||||| Sbjct 6253021 ACAAAAAACCTGTTTGATTTTATGGAAAACATATCAATAGAGGGAAAGACAAACTTTTTC 6253080 Query 58389 GaaaaaaaaGTTAGCGAATATCAAA 58413 ||||| ||| ||||||||||| Sbjct 6253081 TAAAAACGCGTTTCCGAATATCAAA 6253105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766360995440