Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 244 1e-59 >seq3 Length=13783801 Score = 244 bits (270), Expect = 1e-59 Identities = 494/726 (68%), Gaps = 18/726 (2%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||||||||| |||||||| || || | || ||||||||| || ||||||||||| Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 63248 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 ||| ||| | ||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 9227096 CCATTCT---TGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAG 9227152 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTT---TCCTGTATTCTTTTTAAGATCGAGGAA 63361 || || ||||| | | ||||||| | ||| || ||||| ||| | || Sbjct 9227153 GAACAGGTCTCTGGCAC---GTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAA 9227209 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | ||||| | ||||| || |||| ||| || || | |||| || |||||||| Sbjct 9227210 CTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTT 9227269 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 |||||| ||||| | || | ||| || ||||| || || | | |||||| || | || Sbjct 9227270 TCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCC 9227329 Query 63482 GTTTGATATACCATTGGTACCGGAGAT-ATAGCCTCCACTGGCACGAATATTACTA--AT 63538 ||| ||| | ||||| || || | ||| | || |||| |||| ||||| || | || Sbjct 9227330 GTTAGATGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACAT 9227388 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 || || || ||||| || || |||| || || | || || | || || || || || Sbjct 9227389 TG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTA 9227446 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 ||| || ||| || || |||| | || || || || |||||| || |||| Sbjct 9227447 GATTCCGAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACG 9227506 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718 ||||||| ||| || | || || || || || || | | || || | || Sbjct 9227507 GCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAG 9227566 Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63778 ||| || ||||| || || || ||||| | ||| ||||| | | |||||||| Sbjct 9227567 ATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCAT 9227626 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 ||||| ||||| || | || ||||| | |||||||| || | | |||||| || Sbjct 9227627 CAACATCTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTC 9227686 Query 63839 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 63898 || ||||| || || |||||| |||| ||| |||| || ||||| | || | ||||| Sbjct 9227687 CAGTGTTTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTAGACGATGGCGGAATT 9227746 Query 63899 GAGCTT 63904 ||||| Sbjct 9227747 CAGCTT 9227752 Score = 138 bits (152), Expect = 1e-27 Identities = 317/474 (67%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 62033 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62092 || ||| |||| |||||||||| | | | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 62093 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62152 ||| || || || || |||||||||| |||||||| || | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 62153 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62212 || | || || || || || | |||||| |||||| ||| | ||||| | || || Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 62213 AGCCATTTTTATGATCGTCTTTT-GTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAA 62271 |||||| | || || ||||||| | | || ||||| | || ||||| | ||| | Sbjct 9225785 AGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 62272 TATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCT 62328 | || ||||| | | || |||||||||||| | | || | | ||||| Sbjct 9225844 TGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCT 9225903 Query 62329 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTA 62388 | ||||||||| |||| ||| ||| || ||| | | || | || || || || | Sbjct 9225904 TCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAA 9225963 Query 62389 CTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62448 ||||| |||||||| | || | |||| ||| || || || || || || | | Sbjct 9225964 TCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGG 9226023 Query 62449 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62502 | ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 9226024 ATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCA 9226077 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 |||||| || ||||| || | ||| |||||||| |||||||| |||||||| |||| Sbjct 4094449 CCAATCGTTCATATCCTTTCCAAGATCGACTTCTTCGACTGTCCAGAATGATGCAACTGC 4094508 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 |||||| || | |||||||||||||||| || | |||||| || || |||| ||| Sbjct 4094509 CTTTTTGTAGAAGTTCCAGATGTCATGATGTTTCAGTGGGAAGATGACGAATCGATT 4094565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817544890960