Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=13783801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 216/324 (67%), Gaps = 11/324 (3%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || ||||| ||| ||| ||||| ||||||||||| || || || | ||| || || Sbjct 4093958 ATGAGCTCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATC 4094017 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | ||| ||||| ||| ||||| |||||||| |||||||| || || | | |||||| Sbjct 4094018 GAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCA 4094077 Query 11786 CC---ATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 | | |||| ||| || ||||| ||||| ||||| ||||| || | | Sbjct 4094078 GCGAACGAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATG 4094137 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATAT 11902 | || | || | ||||| || | | || ||| | | ||| | | ||| Sbjct 4094138 AACTCGAACTCATCAACGGCGTTGAAAAGAGTGTTTCGTTCCGTCTCATCACGAATATAA 4094197 Query 11903 GTATCTATTAATAAACT----ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || ||| | || ||||| ||||||||||| || || || || || || || Sbjct 4094198 GTCTC----AATCAGCTTCGAGTACATCTCTGAATGAATGTTCTCAATGGCAATCTGGAA 4094253 Query 11959 TCCATAGAAACATCGTGCCTCTGA 11982 ||| |||||| | ||||| ||||| Sbjct 4094254 TCCGTAGAAAAACCGTGCTTCTGA 4094277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524759004080