Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 237 2e-57 >seq3 Length=13783801 Score = 237 bits (262), Expect = 2e-57 Identities = 480/705 (68%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| |||||||| || || | ||| ||||||||| || ||||||||||| Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 66041 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 ||| ||| | ||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 9227096 CCATTCT---TGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAG 9227152 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTT---TCCTGTATTCTTTTTAAGATCGAGGAA 66154 || | ||||||| | ||||||| | ||| || ||||| ||| | || Sbjct 9227153 GAACAGGTCTCTGGCAC---GTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAA 9227209 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 | | | ||||| ||||| || |||| ||| || || | |||| || |||||||| Sbjct 9227210 CTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTT 9227269 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | ||| || ||||| || || | | |||||| || | || Sbjct 9227270 TCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCC 9227329 Query 66275 ATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAATATTACTA--AT 66331 || ||||| ||||| || || | ||| | || |||| | || ||||| || | || Sbjct 9227330 GTTAGATGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACAT 9227388 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 || || || ||||| || || |||| || || | || || | || || ||||| || Sbjct 9227389 TG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTA 9227446 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 ||| || || || || |||| | || || || || |||||| || |||| Sbjct 9227447 GATTCCGAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACG 9227506 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 | ||||||| ||| || | || || || || || || | | || || | || Sbjct 9227507 GCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAG 9227566 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||| || ||||| || || || ||||| | ||| ||||| | | |||||||| Sbjct 9227567 ATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCAT 9227626 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 ||||| ||||| || | || || |||| |||||||| || | | |||||| || Sbjct 9227627 CAACATCTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTC 9227686 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 || ||||| || || |||||| |||| ||| |||| || ||||| Sbjct 9227687 CAGTGTTTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTA 9227731 Score = 143 bits (158), Expect = 4e-29 Identities = 318/474 (67%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 64826 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 64885 || ||| |||| |||||||||| | | | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 64886 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 64945 ||| || || || || |||||||||| |||||||| || | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005 || | || || || || || | |||||| |||||| ||| | ||||| | || || Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAA 65064 |||||| | || || ||||||| || || ||||| | || ||||| | ||| | Sbjct 9225785 AGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 65065 TATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 65121 | || ||||| | | || |||||||||||| | || || | | ||||| Sbjct 9225844 TGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCT 9225903 Query 65122 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 65181 | ||||||||| |||| ||| ||| || ||| | | || | || ||||| || | Sbjct 9225904 TCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAA 9225963 Query 65182 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 65241 || || |||||||| | || | |||| ||| || || || || || || | | Sbjct 9225964 TCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGG 9226023 Query 65242 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 65295 | ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 9226024 ATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCA 9226077 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 |||||| || ||||| || | ||| |||||||| |||||||| |||||||| |||| Sbjct 4094449 CCAATCGTTCATATCCTTTCCAAGATCGACTTCTTCGACTGTCCAGAATGATGCAACTGC 4094508 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 |||||| || | |||||||||||||||| || | ||| || || || |||| ||| Sbjct 4094509 CTTTTTGTAGAAGTTCCAGATGTCATGATGTTTCAGTGGGAAGATGACGAATCGATT 4094565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172742409880