Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=13783801 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| ||||||| ||||| || || || ||||| || || | Sbjct 5941217 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5941158 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || || || |||| ||||| |||||||| || || Sbjct 5941157 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGA 5941098 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | ||| | || |||| | ||||||| Sbjct 5941097 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACC 5941038 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 5941037 TCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | |||| || ||||| ||||| ||||| |||||| Sbjct 5943698 CCTCCGCGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGAT 5943639 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | || |||||||| || |||||| |||||| |||||||||||| || || Sbjct 5943638 AGAGTGCGTCCA-TCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGG 5943580 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || |||||| ||| | | || | ||||| | | || || Sbjct 5943579 GATTCCCTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGAC 5943520 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | || | || || || ||||| || || ||||| || |||||| || Sbjct 5943519 CTCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCATACCT 5943468 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| || |||| || || || || || ||||| || || Sbjct 5942460 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5942401 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||| || ||||| |||| |||||||||||||| ||||| Sbjct 5942400 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGA 5942341 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | || | | || | || |||| || || || Sbjct 5942340 ATTCCTTCCTTGTC-CTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGAC 5942282 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| ||| | | || || ||||| |||||||| Sbjct 5942281 TTCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCAT 5942234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063956594400