Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 260 2e-64 >seq3 Length=13783801 Score = 260 bits (288), Expect = 2e-64 Identities = 480/699 (69%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| |||||||| ||| || | ||| |||||||| || ||||||||||| Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| ||| ||| | || ||||| |||||||||||||| |||||||||||||| | || Sbjct 9227096 CCATTCTTGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAA 9227155 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || ||||||| | | ||| || ||| || ||||| ||| | ||| | | Sbjct 9227156 CAGGTCTCTGGCACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCGAA 9227215 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||||| | ||||| || |||| ||| || || | |||| || |||||||||||||| Sbjct 9227216 GATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCTCC 9227275 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||||| | || | ||| || ||||| || || | | |||||| || | || || || Sbjct 9227276 TTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTTAGA 9227335 Query 80160 TGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTA--ATTGATAG 80216 ||| ||||| || || | ||| | || |||| |||| ||||| || | |||| || Sbjct 9227336 TGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACATTG--AG 9227392 Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 || ||||| || || |||| || || | || || | || || ||||| ||||| || Sbjct 9227393 TCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCC 9227452 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 ||| || ||| |||| | || || || || |||||| || |||| | || Sbjct 9227453 GAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACGGCATGT 9227512 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 ||||| ||| || | || || || || || || | | || |||| ||||| || Sbjct 9227513 TCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATA 9227572 Query 80397 CGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACAT 80456 ||||| || || || ||||| | ||| ||||| | | |||||||| ||||| Sbjct 9227573 GGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACAT 9227632 Query 80457 GTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGT 80516 ||||| || | || || |||| || ||||| || | | ||| || |||| || Sbjct 9227633 CTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCCAGTGT 9227692 Query 80517 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 ||| || || |||||| |||| ||| |||| || ||||| Sbjct 9227693 TTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTA 9227731 Score = 152 bits (168), Expect = 7e-32 Identities = 320/474 (68%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 78705 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 78764 || ||| |||| |||||||||| | | | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 78765 TCCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACT 78824 ||| || || || || ||||||||||||||||||| || | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 || | || || || || || | |||||| |||||| ||| | ||||| | || || Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAA 78943 |||||| | || || ||||||| || || ||||| | || ||||| | ||| | Sbjct 9225785 AGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 78944 TATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 79000 | || ||||| | | || |||||||||||| | || || | | ||||| Sbjct 9225844 TGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCT 9225903 Query 79001 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 79060 | ||||| ||| |||| ||| ||| || ||| | | || | || ||||| || | Sbjct 9225904 TCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAA 9225963 Query 79061 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCG 79120 || || |||||||| | || | |||| ||| || || || ||||| || | | Sbjct 9225964 TCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGG 9226023 Query 79121 ATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCA 79174 ||||||| ||||| | |||||||||||| || || |||||||| || |||| || Sbjct 9226024 ATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCA 9226077 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 50430 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 50489 |||||| || ||||| || | ||| |||||||| |||||||| |||||||| |||| Sbjct 4094449 CCAATCGTTCATATCCTTTCCAAGATCGACTTCTTCGACTGTCCAGAATGATGCAACTGC 4094508 Query 50490 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 50546 |||||| || | |||||||||||||||| || | |||||| || || |||| ||| Sbjct 4094509 CTTTTTGTAGAAGTTCCAGATGTCATGATGTTTCAGTGGGAAGATGACGAATCGATT 4094565 Score = 96.9 bits (106), Expect = 5e-15 Identities = 284/433 (66%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 |||||| |||||| || ||||| | | || || ||||||||||| || || ||| Sbjct 9226242 GATCCTTCGTATGTCGAGTATGGTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAAT 9226301 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || |||| || ||||||||||| || || ||||||||| |||||| | Sbjct 9226302 GCAGCGTAGTAGATGGTTTCGAAGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTG 9226361 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 ||||| ||| | | || || || || | |||||| ||||||| ||||| || Sbjct 9226362 AATGGGTAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGG 9226421 Query 79471 CTATGTCTCTTATTAGAAATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAAT 79529 | ||| | | ||||||| | || || || || | ||||| || || | || ||||| Sbjct 9226422 CGATGGCGCATATTAGAGTTGCGAGCCTCCTCGACT-GGATAGTAGTTGACGTCAATAAT 9226480 Query 79530 TTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA--T 79587 ||||| | ||| ||| ||| ||||| ||| || ||||||| || || || | Sbjct 9226481 CTTATTCAAATTTCTGGTTATAACTTTAGTCACCTCAGCCAGTTTGACGAAGTCGAACTT 9226540 Query 79588 CGTC-CATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTC 79646 || | | || | || | || | || || || || ||||| || | ||| Sbjct 9226541 TTTCTCGGGGGTCACGTAGCGATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTC 9226600 Query 79647 ATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 || | | | | || | ||| ||||||||||| | ||| |||||| || ||||| | Sbjct 9226601 ATCTGGAGCAGAGTACTCTATGATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAG 9226660 Query 79707 ATTTTGTTGATTA 79719 |||||| || ||| Sbjct 9226661 ATTTTGCTGGTTA 9226673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268737151480