Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=13783801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 || || || || ||| ||| ||||||||||||||||| || || || | ||| || || Sbjct 4093958 ATGAGCTCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATC 4094017 Query 13968 GCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14027 | ||| ||||| || ||||| ||||||||||| || || || || || | || ||| Sbjct 4094018 GAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCA 4094077 Query 14028 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 14087 | ||||| || || |||| ||| ||||| |||||| |||| || || || || Sbjct 4094078 GCGAACGAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATG 4094137 Query 14088 AAATC 14092 || || Sbjct 4094138 AACTC 4094142 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||| || ||| | || || ||||||||||| || || || | || ||||| || Sbjct 4093575 TTGATACTCGGAAACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTC 4093634 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 ||| || || |||||||| | ||| | | | || |||||||| || || | || || Sbjct 4093635 CATGAAGTCGAATGGATTCTTCGACTTGTAAAGCTTGTCACAACCGAGCTCGACGAGCAA 4093694 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || | |||||| || || || ||||| | | ||| ||||| || || | | Sbjct 4093695 ATGATCGGCGACAAACTCGATGTACTGTGACATAAGACGACAGTTCATGCCAATCATGTC 4093754 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA 13820 || |||| | | || | ||||||| ||| || | |||||| || || || ||| Sbjct 4093755 AACTGGAAGTGCCTCAGTCAGGAATTCTTGTTCGATGGCCACAGCGTCCTTGATGATA 4093812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727958023800