Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=13783801 Score = 107 bits (118), Expect = 2e-18 Identities = 220/322 (68%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 || || || || ||| ||| ||||||||||||||||| || || || | ||| || || Sbjct 4093958 ATGAGCTCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATC 4094017 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 | |||||||||||| ||||| ||||||||||| || || || || || |||| ||| Sbjct 4094018 GAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCA 4094077 Query 13816 CCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATA 13875 | ||||| || || |||| || ||||| |||||| |||| || || || || Sbjct 4094078 GCGAACGAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGATG 4094137 Query 13876 AAATCCATTGTTTCGATTGCATTGAATA-AATG-TTCCTTCTCTTTAGTACTTGAAATGT 13933 || || | || | || ||||| | | || ||| ||| | | | | | ||| | Sbjct 4094138 AACTCGAACTCATCAACGGCGTTGAAAAGAGTGTTTCGTTCCGTCTCAT-CACG-AATAT 4094195 Query 13934 ATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAAC 13993 | || ||||| || ||||| || || || ||||| || || || ||||| || | Sbjct 4094196 AAGTCTCAATCAGCTTCGAGTACATCTCTGAATGAATGTTCTCAATGGCAATCTGGAATC 4094255 Query 13994 CATAAAAACATCTAGCTTCTGA 14015 | || ||| | | |||||||| Sbjct 4094256 CGTAGAAAAACCGTGCTTCTGA 4094277 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||| || ||| | || || || |||||||| || || || | || ||||| || Sbjct 4093575 TTGATACTCGGAAACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTC 4093634 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||| || ||||||||||| | ||| | | | || |||||||| || || | | || Sbjct 4093635 CATGAAGTCGAATGGATTCTTCGACTTGTAAAGCTTGTCACAACCGAGCTCGACGAGCAA 4093694 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || | |||||| || || || ||||| | | ||| ||||| || || | | Sbjct 4093695 ATGATCGGCGACAAACTCGATGTACTGTGACATAAGACGACAGTTCATGCCAATCATGTC 4093754 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 || |||| | | ||| | ||||||| ||| || | |||||| || || || ||| Sbjct 4093755 AACTGGAAGTGCCTCAGTCAGGAATTCTTGTTCGATGGCCACAGCGTCCTTGATGATA 4093812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588758123480