Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07]
7 sequences; 100,286,401 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 5e-18
>seq3
Length=13783801
Score = 105 bits (116), Expect = 5e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| || || | | |||||||| | ||| ||||||||| | |||||||||||
Sbjct 5942232 CCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAG 5942173
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || || | ||| || |||||||| ||||| ||||||||||| | ||
Sbjct 5942172 AGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 5942113
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||| || || |||| | || || | ||| ||||| ||| || ||
Sbjct 5942112 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACC 5942053
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || ||||| |||||||| | ||| || || || || ||||||
Sbjct 5942052 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| || ||||| || | |||||| || || | ||||| | || ||
Sbjct 5942947 CACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTC 5942888
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
| ||| || ||||| || ||||| || || ||||| | || | ||||||||| ||
Sbjct 5942887 GAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 5942828
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|||| | || || | ||| ||||| ||| || || || | ||| || || ||
Sbjct 5942827 GATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTT 5942768
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
||| || ||||| || || || || ||||||
Sbjct 5942767 TCCTGTAAGAGTCTTGACGAAGATCTGCATT 5942737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381369567464406
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |