Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 250 3e-61 >seq3 Length=13783801 Score = 250 bits (276), Expect = 3e-61 Identities = 490/720 (68%), Gaps = 6/720 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||||||||| |||||||| || || | ||| ||||||||| || |||||||| || Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| ||| ||| | | ||||| |||||||||||||| |||||||||||||| | || Sbjct 9227096 CCATTCTTGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAA 9227155 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 || ||||||| | | ||| || ||| || ||||| ||| | ||| | | Sbjct 9227156 CAGGTCTCTGGCACGTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCGAA 9227215 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||||| | ||||| || |||| ||| || || | |||| || |||||||||||||| Sbjct 9227216 GATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCTCC 9227275 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | || | ||| || ||||| || || | | |||||| || | || || || Sbjct 9227276 TTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCCGTTAGA 9227335 Query 72243 TGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTGCTA--ATTGATAG 72299 || ||||| || || | ||| | || |||| |||| ||||| ||| | |||| || Sbjct 9227336 TGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACATTG--AG 9227392 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 || ||||| || || |||| || || | || || | || || ||||| ||||| || Sbjct 9227393 TCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTAGATTCC 9227452 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || || || |||| | || || || || |||||| || |||| | || Sbjct 9227453 GAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACGGCATGT 9227512 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||||| ||| || | || || || || || || | | || |||| ||||| || Sbjct 9227513 TCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAGATTATA 9227572 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 ||||| || || || ||||| | ||| ||||| | | |||||||| ||||| Sbjct 9227573 GGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCATCAACAT 9227632 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 ||||| || | || || |||| || ||||| || | | |||||| |||| || Sbjct 9227633 CTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCCAGTGT 9227692 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 ||| || || |||||| |||| ||| |||| || ||||| | || | ||||| || || Sbjct 9227693 TTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTAGACGATGGCGGAATTCAGCTT 9227752 Score = 147 bits (162), Expect = 3e-30 Identities = 308/456 (68%), Gaps = 5/456 (1%) Strand=Plus/Plus Query 70828 TTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATA 70887 || ||||| | ||||||||| || || || || || |||||||||| |||||||| Sbjct 9225645 TTGGTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATT 9225704 Query 70888 CTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCG 70947 || | || ||||| || | ||| |||||||| || | || || |||||| Sbjct 9225705 GATGTGATACCGGCGTAGCTTGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCA 9225764 Query 70948 ATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAAT 71006 ||| | ||||| | || |||||||| | || || ||||||| || || ||||| | Sbjct 9225765 ATGTATGCTCCACGATCAGCAGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACAC 9225823 Query 71007 AGTTTTATAAACTCGCTTAATATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACC 71063 || ||||| | ||| || || ||||| | | || |||||||||||| Sbjct 9225824 TGTGCGATAAAGTTCCTTGATGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATT 9225883 Query 71064 ATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCT 71123 | ||||| | | ||| || ||||| ||| |||| ||| ||| || ||| | | Sbjct 9225884 GTTGGCAATCAGACGATTCTTCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTT 9225943 Query 71124 AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 71183 || | |||||||| || | || || |||||||| | || | |||| ||| || || Sbjct 9225944 GAGCATGTGAGGATTCACAATCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTT 9226003 Query 71184 ACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 71243 || || || || | || ||||| ||||| | |||||||||||| || ||||| || Sbjct 9226004 CGAAGTGTATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGG 9226063 Query 71244 CATAGGTGCCACCAATAGACTATTTCTAAGACCATG 71279 ||| || |||| || ||||| || | | |||||| Sbjct 9226064 CATTGGAGCCATCAGAAGACTGTTGCGGATACCATG 9226099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139141275320