Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq6 86.0 9e-12 seq1 86.0 9e-12 >seq3 Length=13783801 Score = 111 bits (122), Expect = 2e-19 Identities = 202/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||||||||| || ||||||||| | || || || |||||||| | |||||| Sbjct 4094262 TTCTACGGATTCCAGATTGCCATTGAGAACATTCATTCAGAGATGTACTCGAAGCTGATT 4094203 Query 125295 GACATGTACATTCGCGAT---CCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 || | || ||||| ||| || |||| |||||| || || ||||| | || | Sbjct 4094202 GAGACTTATATTCGTGATGAGACGGAACG-AAACAC--TCTTTTCAACGCCGTTGATGAG 4094146 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || || || |||||| | |||| |||| ||||| ||| | ||| || Sbjct 4094145 TTCGAGTTCATCAAGAAGAAGGCTGACTGGGCTCTTCGCTGGATTTCGGACAAGAAGGCT 4094086 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| ||| || ||||| | || ||||| || || ||||| |||||||| || Sbjct 4094085 TCGTTCGCTGAAAGACTCATTGCTTTCGCAGCTGTTGAGGGAATCTTCTTCAGTGGATCA 4094026 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || || | ||||| ||||| |||||||| ||| | ||||| ||| |||| || Sbjct 4094025 TTCGCTTCGATCTTCTGGCTGAAGAAGCGTGGATTGATGCCAGGATTGACACA 4093973 Score = 104 bits (114), Expect = 3e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || |||||||| || || || || | || || || |||||||||||||||||| Sbjct 4093790 ATCGAACAAGAATTCCTGACTGAGGCACTTCCAGTTGACATGATTGGCATGAACTGTCGT 4093731 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || |||| ||||||| |||||||| || |||| | | || |||| | | | | Sbjct 4093730 CTTATGTCACAGTACATCGAGTTTGTCGCCGATCATTTGCTCGTCGAGCTCGGTTGTGAC 4093671 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC--TAGAGGGTA 125835 ||| ||||||| | |||||||| || || |||||| || ||||| | | || || | Sbjct 4093670 AAGCTTTACAAGTCGAAGAATCCATTCGACTTCATG--GAGAATATCTCGATCGACGGAA 4093613 Query 125836 AGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAACG 125875 |||| ||||| ||||||||| ||| |||||| |||| Sbjct 4093612 AGACTAACTTCTTCGAGAAGCGGGTTTCCGAGTATCAACG 4093573 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 |||||||||| ||| | | ||||||||||| || || || ||||| |||||||| | Sbjct 4094537 ATCATGACATCTGGAACTTCTACAAAAAGGCAGTTGCATCATTCTGGACAGTCGAAGAAG 4094478 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 ||||||| ||||| || |||||||||||| ||| || |||| | | | Sbjct 4094477 TCGATCTTGGAAAGGATATGAACGATTGGGAGA---AGATGAATGGTGACGAGCAATACT 4094421 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA 125185 | || || | || | ||||||||||||| || || ||||| ||||| || || Sbjct 4094420 TCATTTCTCGGATCCTTGCCTTCTTTGCCGCATCGGACGGAATTGTCAATGAGAA 4094366 >seq6 Length=17718942 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 125637 ATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC 125696 ||| | | ||| ||||| | | |||||||| ||| | |||||||| || | | Sbjct 1430575 ATTATCAACGAGTCCGTGTTGGTTGAACAAGATTTTGTTCGAGAATCCCTGCCCACAAAC 1430634 Query 125697 ATGATTGGCATGAA-CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 ||||||| ||||| | ||| | ||||| | || | || ||||| || |||| ||| Sbjct 1430635 TTGATTGGAATGAATCAGCACA-TGATGTGTAAATATGTTGAATTTGTCGCTGATCTTCT 1430693 Query 125756 ACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 || | |||||| | | ||| |||||| | || || || |||||||| ||| Sbjct 1430694 GCTTGAAGAGTTGGGTTACTCCAAACGCTACAACACAAAAAACCCGTTTGATTTTATGGA 1430753 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAA 125854 | ||||||| ||||||| ||||| ||||||||||| || Sbjct 1430754 AAACATATCAATAGAGGGAAAGACAAACTTTTTCGAAAA 1430792 >seq1 Length=15072434 Score = 86.0 bits (94), Expect = 9e-12 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 70062 AAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATG 70121 |||| || ||||| || ||||| || ||||| || ||||| |||| || | || |||| Sbjct 5138690 AAGAAGGAGATCTTGGACCAGTTTATGGATTTCAATGGAGACACTTTGGGGCGAAATATG 5138749 Query 70122 TAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCAT-TGA 70179 | || || | ||||| || || || || ||||||||||| || || || | | || || Sbjct 5138750 TGGATTGTCATACAGATTACTCTGGACAAGGTGTTGATCAGTTGGCTGA-AGTTATCCGA 5138808 Query 70180 CACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGA 70239 || | | || ||| | | || | | || ||| | |||| | | |||||||| | || Sbjct 5138809 CAGATTAAGGAGCAACCGGATAG-TCGAAGAATCATTATGTCCGCGTGGAATCCGTCGGA 5138867 Query 70240 T-TTGCACCAAATGGCACTACCACCGTGTCAC 70270 | ||| | ||||||| || |||||||||||| Sbjct 5138868 TCTTGGA-CAAATGGTTCTGCCACCGTGTCAC 5138898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059135157320