Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 5e-11 >seq3 Length=13783801 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||| | ||||||||| ||||| || |||||||| || | | || || || || | || Sbjct 5943675 ATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTCGAGCTG 5943616 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTC-CGTGGGTATGCCTTCTTTT--TCGCTAAT 33282 ||||||| ||| || ||||||||||| || ||||| | ||| ||| | | | | | Sbjct 5943615 CTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGATTTT 5943556 Query 33283 CGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 || ||| || | | ||| ||||| | || || || ||||| || |||||||| Sbjct 5943555 GGC---TTTGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTTTCC 5943499 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | ||| || ||||| || ||||| Sbjct 5943498 AGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318777572804286