Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3 134 1e-26 >seq3 Length=13783801 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||||||| || | ||||| || | ||| |||||||| || | ||| || || Sbjct 5941723 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5941664 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||||| ||||| |||||| | ||||| | ||||||||||||||| || Sbjct 5941663 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGG 5941604 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | ||| || |||||||| ||| ||||| | ||||| Sbjct 5941603 ATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACT 5941544 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| |||||||| | || || || ||||||||||| Sbjct 5941543 TCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||||| || | ||||| || | |||||| |||||||| | ||| || ||| Sbjct 5943192 CCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGG-- 5943135 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || || || || ||||||||| | ||||| | ||| ||||||||||| | Sbjct 5943134 AGAGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTG 5943075 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | ||| || ||||| || ||| || |||| | |||| Sbjct 5943074 GGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGA 5943015 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| |||||||| |||||||| | || || || ||||||||||| Sbjct 5943014 CTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5942966 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | |||||| || | || |||||||| || | || || || Sbjct 5942964 CCTCCTCTGAGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAA 5942905 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| || || |||||| | ||||| || | |||||||||||| || Sbjct 5942904 AGGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGG 5942845 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||||||||| | || || ||||| ||| | | |||||||| || || Sbjct 5942844 ATACCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACC 5942785 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| ||||| |||||||| || || ||||||||||| Sbjct 5942784 TCGAGCGTGATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCAT 5942738 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || | ||||| || | |||||| |||||||| | ||| | Sbjct 5942240 TTTGCATTCCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGT 5942181 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| | ||| | |||||| || || |||||| ||||||| || | || |||| Sbjct 5942180 AATCGGAGAGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGAT 5942121 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || |||||||| ||||| | || || ||||| ||| | | |||||||| Sbjct 5942120 CTGGTGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAG 5942061 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| || || || ||||| || | ||| || || ||||||||||| Sbjct 5942060 CTTCAACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||| || | ||||| || | ||| |||||||| || | ||| | Sbjct 5942468 TTTGCATACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGT 5942409 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | || || ||||| ||||| | ||||| | | |||||||| Sbjct 5942408 AGTCCGAAAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGAT 5942349 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| ||||| ||||| | ||| || ||||| ||| ||| || || | | Sbjct 5942348 CTGGAGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGG 5942289 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||| ||||| ||||||| || || ||||| ||||| Sbjct 5942288 CTTCGACTTCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCAT 5942234 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | |||||||| | |||||||||||| || | ||| || || Sbjct 5941221 CATTCCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTC 5941162 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 || ||| | ||||| ||||| |||||| | ||||| | | ||||||||||| Sbjct 5941161 AGACAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGG 5941102 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||| ||||| | || || || ||||| ||| || || | || Sbjct 5941101 TGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTC 5941042 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || | ||||| ||||||||||| | ||||| || ||||| |||||| || Sbjct 5941041 CACCTCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGATT 5940987 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| |||||| | |||| |||||| ||||| ||||| Sbjct 5943668 GTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTCGAGCTGCTTTCCA 5943609 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| || | |||||||||||| || || || || || || | ||||| || ||| Sbjct 5943608 GCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGATTTTGGCTTTG 5943549 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | ||||| || | ||||||||||||||||| | ||| Sbjct 5943548 ACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTTTCCAGTCAAAGTC 5943489 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 5943488 TTGACGAAGATCTGCAT 5943472 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | ||||||||||| || || || || ||||| | ||| || ||||||| Sbjct 5941354 CAAAGATAAGACGCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGAATCTTGGCCTTGA 5941295 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| ||||| | || || |||| |||||||| |||||||| | ||| | Sbjct 5941294 CGTTCTCGATCGTGTCGGAAGCTTCAACTTCAAGTGTGATGGTCTTTCCAGTCAAAGTCT 5941235 Query 94992 TCACAAAGATCTGCAT 95007 | |||||||||||||| Sbjct 5941234 TGACAAAGATCTGCAT 5941219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || | ||| ||||||||||| ||||| ||||| ||||| | || || ||||||| Sbjct 5941860 CAAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGA 5941801 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | | ||||| || | |||||||| ||||| || | || | Sbjct 5941800 CATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAATGTCT 5941741 Query 94992 TCACAAAGATCTGCAT 95007 | || ||||||||||| Sbjct 5941740 TGACGAAGATCTGCAT 5941725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291160774520