Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07]
7 sequences; 100,286,401 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 3e-14
>seq1
Length=15072434
Score = 91.5 bits (100), Expect = 3e-14
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531
|||||| || ||||| ||||| ||||||||||| || ||| ||| | || | |
Sbjct 13087669 ATAAAACCAAATATGTGATTCATTATAAAAATTTAAAGCAAGTATTAAAAAATGGAATGG 13087610
Query 4532 TTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATA 4591
|| | |||||||| || ||| ||| ||| | |||| | ||| | ||||||
Sbjct 13087609 TTTTGAAGAAAATTCATAGAGTTGTGAGTTTTAGGGAATCTAATTGGTTGGCTCCATATA 13087550
Query 4592 TCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651
| || ||||||| |||| | ||||| |||||||| |||||| | || | |
Sbjct 13087549 TAGAGCTAAATACCAATCTTAGAAAGATTGCTAAAAATGAGTTTGAAAAAGATTTCTTCA 13087490
Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701
|| | ||||| || | || |||||||| || ||||| |||||| |||||
Sbjct 13087489 AACTCATGAACAACTCTGTGTTTGGAAAAACAATGGAAAATGTAAGAAAA 13087440
Score = 86.0 bits (94), Expect = 1e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAG 4531
|||||| || ||||| ||||| ||||||||||| || ||| ||| | || | |
Sbjct 10317034 ATAAAACCAAATATGTGATTCATTATAAAAATTTAAAGCAAGTATTAAAAAATGGAATGG 10317093
Query 4532 TTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATA 4591
|| | |||||||| || ||| ||| ||| | |||| | ||| | ||||||
Sbjct 10317094 TTTTGAAGAAAATTCATAGAGTTGTGAGTTTTAGGGAATCTAATTGGTTGGCTCCATATA 10317153
Query 4592 TCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651
| || ||||||| |||| | ||||| |||||||| |||||| | || | |
Sbjct 10317154 TAGAGCTAAATACCAATCTTAGAAAGATTGCTAAAAATGAGTTTGAAAAAGATTTCTTCA 10317213
Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701
|| | ||||| || | || |||||||| || ||||| |||||| | |||
Sbjct 10317214 AACTCATGAACAACTCTGTGTTTGGAAAAACCATGGAAAATGTAAGGAAA 10317263
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97974391855878
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |