Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq4 102 1e-16 >seq4 Length=17493829 Score = 102 bits (112), Expect = 1e-16 Identities = 225/333 (68%), Gaps = 6/333 (2%) Strand=Plus/Plus Query 193653 TATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCT 193712 ||| || | | ||||||| ||| || ||||| || ||||| ||||||| || ||| || Sbjct 8989290 TATCATTTGGCTGCTCAATCTCACGTCAAAGTGTCTTTTGATTTGCCAGAATACACTGCT 8989349 Query 193713 AATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATG-TTGGGAATGGA 193771 | || || ||| | ||||||||| | | || || ||| | | ||| ||| | || Sbjct 8989350 GAAGTAGACGCTGTTGGAACTCTTCGCCTTCTCGATGCAATCC--ATGCTTGTCGTTTGA 8989407 Query 193772 --GAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGC 193829 |||| | ||||| ||||||| ||||| || |||| ||||||| |||| || Sbjct 8989408 CTGAAAAA-GTTCGATTCTATCAAGCATCCACATCCGAATTGTATGGAAAAGTTCAAGAG 8989466 Query 193830 ACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTG 193889 | ||||| | || | || ||||| ||||| | ||||| |||| ||| || ||| || Sbjct 8989467 ATTCCACAAAGTGAGAAGACTCCATTCTATCCAAGATCTCCATATGCTGTTGCCAAGATG 8989526 Query 193890 TATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGT 193949 || || || ||||| | || |||||||| | || | ||| | ||| Sbjct 8989527 TACGGGTACTGGATTGTTGTTAACTATCGTGAAGCCTACAATATGTTTGCTTGCAATGGA 8989586 Query 193950 ATTCTCTTCAATCACGAATCTCCAAGAAGAGGT 193982 ||| | ||||| || || ||||||||||||| Sbjct 8989587 ATTTTGTTCAACCATGAGAGTCCAAGAAGAGGT 8989619 Score = 96.9 bits (106), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 193979 AGGTGAGACATTTGTAACTCGTAAGATTACACAAGGTTTAT---CTAAGATCTCTGTTGG 194035 ||| |||||||| || ||||||||||| || | ||| | |||| ||| | | || Sbjct 8989687 AGGAGAGACATTCGTGACTCGTAAGATCACTC---GTTCAGTCGCTAAAATCAGTTTGGG 8989743 Query 194036 ATTACAGAAGATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAA 194095 |||| | | || | || || ||||| | |||| | |||||||||||||| | Sbjct 8989744 GCAACAGGAAAGCATTGAGCTCGGAAATCTGAGTGCTCTTCGTGATTGGGGACACGCCAG 8989803 Query 194096 GGATTATGTTGAAGCGATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGAT 194155 || ||||||||||| |||||| ||| | ||||| || ||| ||||||| |||||| Sbjct 8989804 AGAGTATGTTGAAGCAATGTGGAGAATTCTTCAACACGACTCACCAGATGATTTTGTGAT 8989863 Query 194156 TGCTACAGGTGAACAGTATTC--TGTTAGAGACTTT 194189 ||| || || |||| |||| ||| ||||| ||| Sbjct 8989864 TGCAACTGGAAAACA--ATTCAGTGTCAGAGAGTTT 8989897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807555129338920