Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 251 9e-62 >seq3 Length=13783801 Score = 251 bits (278), Expect = 9e-62 Identities = 483/705 (69%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| |||||||| || || | ||| ||||||||| || ||||||||||| Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 63197 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 ||| ||| | ||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 9227096 CCATTCT---TGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAG 9227152 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTT---TCCTGTATTCTTTTTAAGATCGAGGAA 63310 || || ||||||| | ||||||| | ||| || ||||| ||| | || Sbjct 9227153 GAACAGGTCTCTGGCAC---GTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAA 9227209 Query 63311 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63370 | | | ||||| | ||||| || |||| ||| || || | |||| || |||||||| Sbjct 9227210 CTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTT 9227269 Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||| | || | ||| || ||||| || || | | |||||| || | || Sbjct 9227270 TCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCC 9227329 Query 63431 GTTTGATATACCATTGGTACCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTA--AT 63487 ||| ||| | ||||| || || | ||| | || |||| |||| ||||| || | || Sbjct 9227330 GTTAGATGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACAT 9227388 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 || || || ||||| || || |||| || || | || || | || || || || || Sbjct 9227389 TG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTA 9227446 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 ||| || ||| || || |||| | || || || || |||||| || |||| Sbjct 9227447 GATTCCGAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACG 9227506 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 | ||||||| ||| || | || || || || || || | | || || | || Sbjct 9227507 GCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAG 9227566 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||| || ||||| || || || ||||| | ||| ||||| | | |||||||| Sbjct 9227567 ATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCAT 9227626 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 ||||| ||||| || | || || |||| |||||||| || | | |||||| || Sbjct 9227627 CAACATCTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTC 9227686 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 || ||||| || || |||||| |||| ||| |||| || ||||| Sbjct 9227687 CAGTGTTTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTA 9227731 Score = 143 bits (158), Expect = 3e-29 Identities = 318/474 (67%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 61982 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 62041 || ||| |||| |||||||||| | | | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 62042 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 62101 ||| || || || || |||||||||| |||||||| || | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 62102 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62161 || | || || || || || | |||||| |||||| ||| | ||||| | || || Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 62162 AGCCATTTTTATGATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAA 62220 |||||| | || || ||||||| || || ||||| | || ||||| | ||| | Sbjct 9225785 AGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 62221 TATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 62277 | || ||||| | | || |||||||||||| | || || | | ||||| Sbjct 9225844 TGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCT 9225903 Query 62278 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337 | ||||||||| |||| ||| ||| || ||| | | || | || ||||| || | Sbjct 9225904 TCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAA 9225963 Query 62338 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62397 || || |||||||| | || | |||| ||| || || || || || || | | Sbjct 9225964 TCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGG 9226023 Query 62398 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451 | ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 9226024 ATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCA 9226077 Score = 123 bits (136), Expect = 3e-23 Identities = 289/433 (67%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 |||||| | ||||| ||||||||| | | |||||| | ||||||||| || || ||| Sbjct 9226242 GATCCTTCGTATGTCGAGTATGGTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAAT 9226301 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 ||| |||| || |||||||||||||| || || |||||| ||||| | Sbjct 9226302 GCAGCGTAGTAGATGGTTTCGAAGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTG 9226361 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 ||||| ||| | | || || || || | |||||| ||||||| ||||| || Sbjct 9226362 AATGGGTAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGG 9226421 Query 62748 CTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 | ||| | | |||||||| | || || || || | ||||| || || | || ||||| Sbjct 9226422 CGATGGCGCATATTAGAGTTGCGAGCCTCCTCGACT-GGATAGTAGTTGACGTCAATAAT 9226480 Query 62807 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--- 62863 ||||| | ||||||| || ||||| ||| || |||||||| || || || Sbjct 9226481 CTTATTCAAATTTCTGGTTATAACTTTAGTCACCTCAGCCAGTTTGACGAAGTCGAACTT 9226540 Query 62864 TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 62923 | | | | || | || | |||| || || || || ||||| || | ||| Sbjct 9226541 TTTCTCGGGGGTCACGTAGCGATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTC 9226600 Query 62924 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 62983 || | | | | || | ||| || |||||||| | || ||||||||||||||| | Sbjct 9226601 ATCTGGAGCAGAGTACTCTATGATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAG 9226660 Query 62984 ATTTTGTTGATTA 62996 |||||| || ||| Sbjct 9226661 ATTTTGCTGGTTA 9226673 Score = 118 bits (130), Expect = 1e-21 Identities = 236/349 (68%), Gaps = 7/349 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || || |||||| || | ||| ||||| | |||||||| || ||||| || || Sbjct 4093958 ATGAGCTCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAGATC 4094017 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 ||||||||||||||| ||||||||||| || || || || || ||||| ||||| || Sbjct 4094018 GAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTTTCA 4094077 Query 33460 CCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33514 | | || || || ||| ||||| ||||||| || |||||||| || | Sbjct 4094078 GC--GAACGAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTTGA 4094135 Query 33515 CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33574 | | | || | ||| || || ||| |||| ||| | ||| || || Sbjct 4094136 TGAACTCGAACTCATCAACGGCGTTGAAAAGAGTGTTTCGTTCCGTCTCATCACGAATAT 4094195 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 |||| || |||| ||||| || ||||||||||| |||||||| ||||| |||| Sbjct 4094196 AAGTCTCAATCAGCTTCGAGTACATCTCTGAATGAATGTTCTCAATGGCAATCTGGAATC 4094255 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 |||||||| | | || || | | || ||||| | | |||||||| Sbjct 4094256 CGTAGAAAAACCGTGCTTCTGAGACTTGAACTTCGTTCGAGAATCGTTC 4094304 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| || ||||| || |||||||| || ||||| || || | | | || | Sbjct 4094361 CCAAGTTCTCATTGACAATTCCGTCCGATGCGGCAAAGAAGGCAAGGATCCGAGAAATGA 4094420 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 | |||| ||||| | | || | |||||| || ||||| || | ||| |||| Sbjct 4094421 AGTATTGCTCGTCACCATTCATCTTCTCCCAATCGTTCATATCCTTTCCAAGATCGACTT 4094480 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| |||||||| |||||||| |||||||||| || | |||||||||||||| || || Sbjct 4094481 CTTCGACTGTCCAGAATGATGCAACTGCCTTTTTGTAGAAGTTCCAGATGTCATGATGTT 4094540 Query 33866 GGATTGGGAAAATAACAAATCTATT 33890 | |||||| || || |||| ||| Sbjct 4094541 TCAGTGGGAAGATGACGAATCGATT 4094565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947145492120