Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 >seq3 Length=13783801 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || ||||| |||||||| | ||||| | ||| | ||| | Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || |||||||| | || ||| |||||||||||||| | | | | | || |||||| ||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || |||||| | ||| |||| || | || |||||||| Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGG 5943192 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || ||||||||| | |||||| | || | || | | Sbjct 5940991 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 5941050 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| ||||| ||||| ||||| || || || ||||| Sbjct 5941051 GATACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941110 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | | | | | ||||| ||| Sbjct 5941111 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 5941170 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || ||||||||| | || |||| || | ||||||||||||| Sbjct 5941171 ATCCAGAAGGAATCTACTCTTCACTTGGTTCTTCGTCTTAGAGGAGGAA 5941219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||| |||||||||| | || | || || ||||| | |||||||||||| || || || Sbjct 9225614 CACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACATTCCAGTCTT 9225673 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGC 147232 | ||||| | ||| ||| || || |||| | | | ||| |||| ||||| Sbjct 9225674 GAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCTTGGCTTGGC 9225733 Query 147233 CACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTC 147292 || || || || |||||| ||||| ||||| | ||| || || || ||||| || Sbjct 9225734 CATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGCAGCCATCTC 9225793 Query 147293 CAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGG 147352 | | ||||||| || ||||| | || | || ||||||| | | ||| Sbjct 9225794 AATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGATGTCGGATGG 9225853 Query 147353 AATTTCATCAATATTTTGTACAGATCCGTTGTT 147385 |||| ||||||| ||||| | ||||| ||||| Sbjct 9225854 AATTCCATCAATGTTTTGAATGGATCCATTGTT 9225886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662358117040