Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 219 1e-51 seq5 86.0 2e-11 >seq3 Length=13783801 Score = 219 bits (242), Expect = 1e-51 Identities = 476/701 (68%), Gaps = 16/701 (2%) Strand=Plus/Minus Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGT-ATCAATGGTGATATTGTTG 363448 |||||||| || || ||||| |||||||| |||| || || || ||||| | Sbjct 9227705 TTTCGGATTCAAAACACTGGAGCGTTCCTACCT-TCTCAAGATAAACAAGGAGATTGTCG 9227647 Query 363449 AACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATG 363508 | ||||| ||||| ||||| ||||||||| ||||||| |||||| | ||| || | Sbjct 9227646 AGCGCCCACAGCAGATGTTGATGCGTGTTTCTATTGGAATCCATGGAGATGATATTACTT 9227587 Query 363509 CCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568 |||| || || || ||||| || | | ||| | || || || | ||||| Sbjct 9227586 CCGCAATCGAGACCTATAATCTGATGTCGGAGCGTTACATGACCCATGCGTCCCCAACTC 9227527 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | |||| | ||||| | ||| ||||||||||| ||||| ||||| | ||||| | Sbjct 9227526 TCTTCAATTCGGGAACATGCCGTCCTCAGATGTCTTCATGCTTCCTTCTGACAATGAGTG 9227467 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||||| || |||| || ||| | ||| | |||||||||||||| || | || Sbjct 9227466 AAGACTCCATTCTCGGAATCTACGATACATTGAAGCAGTGTGCTCTTATTTCAAAAAGTG 9227407 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CAC-AGAACAGTTACATTCGC-G 363745 | || ||||| || | | ||||| |||| | ||| || | || | |||| | Sbjct 9227406 CCGGAGGAATCGGACTCAATGTTCACAAAATTCGCGCCACTGGATCTGTGA---TCGCTG 9227350 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 | || ||| || || || || | || ||||||||||| | | |||||||| Sbjct 9227349 GAACTAATGGAACATCTAACGGACTCATACCAATGCTTCGTGTCTACAATAATACTGCTC 9227290 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || || || || || ||| || ||| ||| || |||||||| || || ||||| Sbjct 9227289 GTTATGTTGATCAAGGAGGAAACAAACGCCCAGGAGCATTTGCTATTTACCTGGAGCCAT 9227230 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGA---AAAGAGGAAT 363922 || |||||||| || |||||| | ||||| || ||||| ||| |||||||| Sbjct 9227229 GGCACGCCGATATCTTCGAGTTTGTATCTCTCCGCAAGAACACTGGACCGGAAGAGGAA- 9227171 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 ||||| | || |||||| ||| |||||| || | || | ||||||||||| || | Sbjct 9227170 --CGTGCCAGAGACCTGTTCCTTGCTCTTTGGATTCCAGATCTCTTTATGAAGCGAGTCG 9227113 Query 363983 AGGCAGGT-AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 || | | ||||| ||||| | | |||||| ||||||||||| ||| ||| Sbjct 9227112 AGAAGGATCAAGAA-TGGTCGTTGATGTGCCCATGTGAATGTCCAGGACTTGATGATTGC 9227054 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 ||||| || || | | ||||| |||| ||||| | ||| Sbjct 9227053 TGGGGAGAGGAGTTCGAAGCTCTTTACGCCAAGTAAGTATC 9227013 Score = 98.7 bits (108), Expect = 3e-15 Identities = 285/436 (65%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 364722 GCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGAT 364781 |||||||| |||||| || | | || || ||||| || ||||| ||||| || || Sbjct 9226100 GCATGGTATCCGCAACAGTCTTCTGATGGCTCCAATGCCAACTGCTTCCACTGCTCAAAT 9226041 Query 364782 CCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCT 364841 ||||||||||| || | | |||| || | || || | || || ||||| ||||| Sbjct 9226040 TCTCGGAAACAATGAATCCATCGAGCCATACACTTCGAACATCTACTCTCGCCGTGTTCT 9225981 Query 364842 TTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCT 364901 ||| ||||| || | | | || ||| || | |||||||| | || | || | Sbjct 9225980 TTCTGGAGATTTCCAGATTGTGAATCCTCACATGCTCAAGGATTTGGTGGAAAGAGGATT 9225921 Query 364902 GTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCC 364961 |||| ||| |||||||| | | || ||| ||||| || | || |||||| Sbjct 9225920 GTGGACTGATGAGATGAAGAATCGTCTGATTGCCAACAATGGATCCATTCAAAACATTGA 9225861 Query 364962 AGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAA 365020 ||| ||||| || | ||| |||| || || ||||| || || || | Sbjct 9225860 TGGAATTCCATCCGACATCAAGGAACTTTATCGCACAGTGTGGGAGATCTCTCAAAAAGA 9225801 Query 365021 CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACG 365080 | | ||||| ||||| || ||||| || || | || ||| ||| || ||||| Sbjct 9225800 C-ATTATTGAGATGGCTGCTGATCGTGGAGCATACATTGATCAATCCCAATCTCTTAACA 9225742 Query 365081 TATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAAT 365140 | |||| | |||||| || |||| | ||||| |||||||||||||| ||||| Sbjct 9225741 TTCACATGGCCAAGCCAAGCTACGCCGGTATCACATCAATGCATTTCTACGGATGGAAGA 9225682 Query 365141 CCGGTCTTAAGACAGG 365156 || || ||||| || Sbjct 9225681 AGGGACTCAAGACTGG 9225666 >seq5 Length=20924180 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/128 (77%), Gaps = 3/128 (2%) Strand=Plus/Plus Query 27232 GGTTACGAAGGCGCAATTGTTATTGATGCAAAATCGGGG-TTTTATACGGATCCAGTCGC 27290 || |||||||| || | ||| |||||| | | ||| || ||||| | || ||| | || Sbjct 12043523 GGATACGAAGGTGCTACTGTCATTGATCCGAT-TCGAGGATTTTACAATGAACCAATTGC 12043581 Query 27291 CACACTTGACTTTGCATCACTATATCCATCAATTATGCTTGCTCACAATTTATGTTACTC 27350 |||||||| || || || ||||||||||| |||||| ||||||| ||| | |||||| | Sbjct 12043582 AACACTTGATTTCGCTTCTCTATATCCATCCATTATGATTGCTCATAATCTCTGTTACAC 12043641 Query 27351 AAC-CTTT 27357 || |||| Sbjct 12043642 GACACTTT 12043649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353483105474