Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq3 122 7e-23 >seq3 Length=13783801 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| |||||||| | || || | |||||||| ||| Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | || || |||||| ||||| ||||| || || || ||||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||| || ||||||||||| | | | | || ||| || ||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || ||||| ||||||| || | | |||||||||| Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGG 5943192 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| |||||||| | || || | |||||||| || | Sbjct 5941497 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCTTCC 5941556 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| || |||||||| || || || ||||| Sbjct 5941557 GACACGATCGAAAATGTCAAGGCTAAGATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5941616 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || ||| ||||| ||||| || | | | | | | || || ||| Sbjct 5941617 CAAAGACTTATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 5941676 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || ||||||| || | | ||||||||||| Sbjct 5941677 ATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5941723 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | | ||||| | || ||| |||||||||| ||| Sbjct 5942233 AATGCAAATCTTCGTCAAGACTCTTATCGGAAAGACCATCACCCTCGAAGTCGAAGCCTC 5942292 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| ||||||||| | || || |||||| ||||| ||||| || ||||| ||||| Sbjct 5942293 CGATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAAGGAATTCCTCCAGATCA 5942352 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | || || | || || ||||| |||||||| | | | | | | || || || Sbjct 5942353 GCAACGTCTCATCTTCGCTGGAAAGCAGCTCGAAGACGGCCGCACCCTTTCGGACTACAA 5942412 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || || ||||| || ||||||| || | | ||||||||||| Sbjct 5942413 CATCCAGAAGGAATCAACTCTTCATTTGGTTCTCCGTTTGAGAGGAGG 5942460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || ||||| | ||||| | || || || || Sbjct 5942005 AATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTC 5942064 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || || ||||| ||||| ||||| || || || ||||| Sbjct 5942065 TGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGATCA 5942124 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||| | | ||| ||||||||||| |||| | | | || |||||| || Sbjct 5942125 ACAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAA 5942184 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| ||||| || ||||| ||||||| || Sbjct 5942185 CATCCAAAAGGAGTCTACTCTTCATTTGGT 5942214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| || ||||| | || ||| |||||||||| ||| | Sbjct 5941725 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5941784 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 5941785 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941844 Query 24111 CAGAGACTGATTT 24123 |||||||| |||| Sbjct 5941845 CAGAGACTTATTT 5941857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||||| || ||||| | || ||| |||||||||| ||| | Sbjct 5943194 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5943253 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 5943254 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5943313 Query 24111 CAGAGACTGATTTACG 24126 |||||||| |||| || Sbjct 5943314 CAGAGACTTATTTTCG 5943329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935963321085