Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 255 7e-63 >seq3 Length=13783801 Score = 255 bits (282), Expect = 7e-63 Identities = 484/705 (69%), Gaps = 18/705 (3%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| |||||||| || || ||||| ||||||||| || ||||||||||| Sbjct 9227036 TTCGAACTCCTCTCCCCAGCAATCATCAAGTCCTGGACATTCACATGGGCACATCAACGA 9227095 Query 63052 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 ||| ||| | ||||||| ||||| |||||||||||||| |||||||||||||| | Sbjct 9227096 CCATTCT---TGATCCTTCTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAG 9227152 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTT---TCCTGTATTCTTTTTAAGATCGAGGAA 63165 || || ||||||| | ||||||| | ||| || ||||| ||| | || Sbjct 9227153 GAACAGGTCTCTGGCAC---GTTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAA 9227209 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | ||||| | ||||| || |||| ||| || || | |||| || |||||||| Sbjct 9227210 CTCGAAGATATCGGCGTGCCATGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTT 9227269 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | ||| || ||||| || || | | |||||| || | || Sbjct 9227270 TCCTCCTTGATCAACATAACGAGCAGTATTATTGTAGACACGAAGCATTGGTATGAGTCC 9227329 Query 63286 ATTGGATGTACCATTGGTCCCTGAGAT-ATAGCTTCCACTGGCACGAATATTACTA--AT 63342 || ||||| ||||| || || | ||| | || |||| |||| ||||| || | || Sbjct 9227330 GTTAGATGTTCCATTAGTTCCAGCGATCACAG-ATCCAGTGGCGCGAATTTTGTGAACAT 9227388 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402 || || || ||||| || || |||| || || | || || | || || ||||| || Sbjct 9227389 TG--AGTCCGATTCCTCCGGCACTTTTTGAAATAAGAGCACACTGCTTCAATGTATCGTA 9227446 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 ||| || || || || |||| | || || || || |||||| || |||| Sbjct 9227447 GATTCCGAGAATGGAGTCTTCACTCATTGTCAGAAGGAAGCATGAAGACATCTGAGGACG 9227506 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAG 63522 | ||||||| ||| || | || || || || || || | | || || | || Sbjct 9227507 GCATGTTCCCGAATTGAAGAGAGTTGGGGACGCATGGGTCATGTAACGCTCCGACATCAG 9227566 Query 63523 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63582 ||| || ||||| || || || ||||| | ||| ||||| | | |||||||| Sbjct 9227567 ATTATAGGTCTCGATTGCGGAAGTAATATCATCTCCATGGATTCCAATAGAAACACGCAT 9227626 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 ||||| ||||| || | || || |||| |||||||| || | | |||||| || Sbjct 9227627 CAACATCTGCTGTGGGCGCTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTC 9227686 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 || ||||| || || |||||| |||| ||| |||| || ||||| Sbjct 9227687 CAGTGTTTTGAATCCGAAATAGGTGTAGGAATAGTCACGATCGTA 9227731 Score = 147 bits (162), Expect = 3e-30 Identities = 319/474 (67%), Gaps = 5/474 (1%) Strand=Plus/Plus Query 61837 ATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACAT 61896 || ||| |||| |||||||||| | | | || || || ||||| | ||||||||| Sbjct 9225605 ATTCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACAT 9225664 Query 61897 TCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACT 61956 ||| || || || || |||||||||| |||||||| || | || || || Sbjct 9225665 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCGGCGTAGCT 9225724 Query 61957 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 62016 || | || || || || || | |||||| |||||| ||| | ||||| | || || Sbjct 9225725 TGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAGC 9225784 Query 62017 AGCCATTTTTATAATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAACTCGCTTAA 62075 |||||| | ||||| ||||||| || || ||||| | || ||||| | ||| | Sbjct 9225785 AGCCATCTCAATAAT-GTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 62076 TATCTTCTGGAAGG---TTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 62132 | || ||||| | | || |||||||||||| | || || | | ||||| Sbjct 9225844 TGTCGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTCT 9225903 Query 62133 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62192 | ||||||||| |||| ||| ||| || ||| | | || | || ||||| || | Sbjct 9225904 TCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACAA 9225963 Query 62193 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 62252 || || |||||||| | || | |||| ||| || || || || || || | | Sbjct 9225964 TCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATGG 9226023 Query 62253 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 | ||||| ||||| | |||||||||||| || ||||| ||||| || |||| || Sbjct 9226024 ATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCA 9226077 Score = 118 bits (130), Expect = 1e-21 Identities = 288/433 (67%), Gaps = 5/433 (1%) Strand=Plus/Plus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 |||||| | ||||| ||||||||| | | |||||| | ||||||||| || || ||| Sbjct 9226242 GATCCTTCGTATGTCGAGTATGGTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAAT 9226301 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 ||| |||| || |||||||||||||| || || |||||| ||||| | Sbjct 9226302 GCAGCGTAGTAGATGGTTTCGAAGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTG 9226361 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 ||||| ||| | | || || || || | |||||| ||||||| ||||| || Sbjct 9226362 AATGGGTAACGCATCAACATGAAGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGG 9226421 Query 62603 CTATGTCTCTTATTAGAGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAAT 62661 | ||| | | |||||||| | || || || || | ||||| || || | || ||||| Sbjct 9226422 CGATGGCGCATATTAGAGTTGCGAGCCTCCTCGACT-GGATAGTAGTTGACGTCAATAAT 9226480 Query 62662 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--- 62718 ||||| | ||||||| || ||||| ||| || |||||||| || || || Sbjct 9226481 CTTATTCAAATTTCTGGTTATAACTTTAGTCACCTCAGCCAGTTTGACGAAGTCGAACTT 9226540 Query 62719 TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 62778 | | | | || | || | |||| || || || || ||||| || | ||| Sbjct 9226541 TTTCTCGGGGGTCACGTAGCGATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTC 9226600 Query 62779 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 62838 || | | | | || | ||| || |||||||| | || ||||||||| ||||| | Sbjct 9226601 ATCTGGAGCAGAGTACTCTATGATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAG 9226660 Query 62839 ATTTTGTTGATTA 62851 |||||| || ||| Sbjct 9226661 ATTTTGCTGGTTA 9226673 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 |||||| || ||||| || | ||| |||||||| |||||||| |||||||| |||| Sbjct 4094449 CCAATCGTTCATATCCTTTCCAAGATCGACTTCTTCGACTGTCCAGAATGATGCAACTGC 4094508 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 33247 |||||| || | |||||||||||||||| || | ||| || || || |||| ||| Sbjct 4094509 CTTTTTGTAGAAGTTCCAGATGTCATGATGTTTCAGTGGGAAGATGACGAATCGATT 4094565 Score = 82.4 bits (90), Expect = 1e-10 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 32385 ACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAAT 32444 || || || ||||| || ||||| || || || | || ||||| |||||||| |||||| Sbjct 4093588 ACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTCCATGAAGTCGAAT 4093647 Query 32445 GGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACA 32504 ||||| | || |||| || | | | || | || | ||| ||| |||||| Sbjct 4093648 GGATTCTTCGACTTGTAAAGCTTGTCACAACCGAGCTCGACGAGCAAATGATCGGCGACA 4093707 Query 32505 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 32564 || || || || | ||| | ||| ||||| || || | | ||||||||| ||| Sbjct 4093708 AACTCGATGTACTGTGACATAAGACGACAGTTCATGCCAATCATGTCAACTGGAAGTGCC 4093767 Query 32565 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 32599 |||| || ||||||||||| || | || ||||| Sbjct 4093768 TCAGTCAGGAATTCTTGTTCGATGGCCACAGCGTC 4093802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631944557200