Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=13783801 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||||||||||| || | || || | || || || | || Sbjct 5942005 AATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTC 5942064 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| ||| ||||| || ||| ||||| ||||| || ||||| || || Sbjct 5942065 TGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGATCA 5942124 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || |||||||| || ||| | || |||| || ||| | ||||||||| Sbjct 5942125 ACAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAA 5942184 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| || || || || ||||| || || | || ||||||||| Sbjct 5942185 CATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGAGGAGGAA 5942234 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| | || || || ||||||| |||| ||||| | || Sbjct 5942737 AATGCAGATCTTCGTCAAGACTCTTACAGGAAAGACCATCACGCTCGAGGTGGAAGCTTC 5942796 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||| ||| ||||| || ||| ||||||||||| || ||||| || || Sbjct 5942797 TGACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCAGATCA 5942856 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || || ||||| || ||| | || |||| || || | || ||||| Sbjct 5942857 GCAACGCTTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACCCTTTCGGACTACAA 5942916 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| || || ||||| ||||| | || |||||||| Sbjct 5942917 TATCCAGAAGGAATCAACCCTCCATTTGGTGCTCCGTCTCAGAGGAGG 5942964 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || ||| ||||||| |||| || || | || Sbjct 5943472 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCG 5943531 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||||| || || || || || ||||| || Sbjct 5943532 GACACCATTGAG--AATGTCAAAGC-CAAAATCCAGGATAAGGAGGGAATCCCACCAGAT 5943588 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || ||||| || || || | || |||| |||||| | ||||||| Sbjct 5943589 CAGCAACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTAC 5943648 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || || ||||| || || || || ||| | || || | || | |||||| Sbjct 5943649 AACATCCAAAAGGAGTCGACACTTCATCTCGTTCTTCGTCTTCGCGGAGGA 5943699 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | ||||| ||||||| || | ||| Sbjct 5942462 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCCTCGAAGTCGAAGCCTCT 5942521 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| ||||| ||||| || ||||| || || Sbjct 5942522 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 5942581 Query 25119 CAGCGGATTATTTTTGCCGG 25138 ||||| |||| |||||||| Sbjct 5942582 CAGCGTCTTATCTTTGCCGG 5942601 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || |||||||| | ||||| || | || Sbjct 5941218 AATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTTGAAGTTGAAGCTTC 5941277 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | || || || | ||| ||||| || || || ||||| || | Sbjct 5941278 CGACACGATCGAGAACGTCAAGGCCAAGATTCA-AGACAAGGAGGGAATCCCACCAGATC 5941336 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | ||||| |||| ||||| || Sbjct 5941337 AGCAGCGTCTTATCTTTGCTGG 5941358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327963031705