Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 120 3e-22 >seq3 Length=13783801 Score = 120 bits (132), Expect = 3e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || |||||||| || || || ||||| ||||| || || | || | || || | | Sbjct 4094366 TTCTCATTGACAATTCCGTCCGATGCGGCAAAGAAGGCAAGGATCCGAGAAATGAAGTAT 4094425 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 | ||| ||| | || | ||| ||||||||| | ||| ||| |||||||||||||||| Sbjct 4094426 TGCTCGTCACCATTCATCTTCTCCCAATCGTTCATATCCTTTCCAAGATCGACTTCTTCG 4094485 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATT 93661 || ||||| || ||||| |||| |||||||| | | ||| ||||| |||| || | | Sbjct 4094486 ACTGTCCAGAATGATGCAACTGCCTTTTTGTAGAAGTTCCAGATGTCATGATGTTTCAGT 4094545 Query 93662 GGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || || ||||| || |||||| ||||| || | |||||| Sbjct 4094546 GGGAAGATGACGAATCGATTATCCAAATCTTGAAGCATCGGCTC 4094589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860751274680