Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 136 3e-27 >seq3 Length=13783801 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || ||||| |||| || || ||||| | || Sbjct 5940991 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACTATCACCCTGGAGGTGGAGGCTTCC 5941050 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| || || ||||||||||| || |||||||| ||||| Sbjct 5941051 GATACCATCGAAAATGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941110 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| ||||||| | || || |||||| Sbjct 5941111 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCTGACTACAAC 5941170 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || ||||| || | || || ||| Sbjct 5941171 ATCCAGAAGGAATCTACTCTTCACTTGGTT 5941200 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| || || ||||| ||||||| || || ||| | | Sbjct 5943472 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAAACCATCACTCTCGAGGTCGAAGCTTCG 5943531 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| ||||| || || |||||||| || ||||| ||||| Sbjct 5943532 GACACCATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAGGGAATCCCACCAGATCAG 5943591 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || || ||| | |||||| ||||| | |||||||||||| Sbjct 5943592 CAACGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGCACTCTATCCGATTACAAC 5943651 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||| | ||| | || | |||||||| Sbjct 5943652 ATCCAAAAGGAGTCGACACTTCATCTCGTTCTTCGTCTTCGCGGAGG 5943698 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || || | |||||||| || ||| | | Sbjct 5942006 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACTATTACTCTTGAGGTTGAAGCTTCT 5942065 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || || ||||||||||| ||||| ||||| |||||| Sbjct 5942066 GACACTATTGAGAACGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCACCAGATCAA 5942125 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || || | |||||| ||| || |||||||||||||| Sbjct 5942126 CAGCGTTTGATCTTTGCCGGAAAGCAACTCGAGGATGGCCGTACTCTCTCCGATTACAAC 5942185 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||||| ||| | || | || ||||| Sbjct 5942186 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGAGGAGG 5942232 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| |||||||| ||| || | Sbjct 5942966 ATGCAGATCTTCGTCAAGACATTGACTGGAAAGACCATCACACTTGAAGTCGAAGCCTCT 5943025 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || |||||||||||||| || || ||||| ||||| Sbjct 5943026 GATACCATCGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGAATCCCACCAGATCAG 5943085 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| ||||| | || || || ||| ||||||| |||||| Sbjct 5943086 CAGAGACTCATCTTCGCCGGAAAACAACTCGAAGACGGTCGTACCCTCTCCGACTACAAC 5943145 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || || || | ||||| ||| | || || | |||||| Sbjct 5943146 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTGAGAGGAGGT 5943193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| |||||||| ||| | || Sbjct 5941219 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACACTTGAAGTTGAAGCTTCC 5941278 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || ||||||||||||||||| || ||||| ||||| Sbjct 5941279 GACACGATCGAGAACGTCAAGGCCAAGATTCAAGACAAGGAGGGAATCCCACCAGATCAG 5941338 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| ||||| || Sbjct 5941339 CAGCGTCTTATCTTTGCTGG 5941358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || || || |||| || ||||| ||| || | Sbjct 5942462 ATGCAAATCTTCGTGAAGACTTTGACTGGAAAGACTATCACCCTCGAAGTCGAAGCCTCT 5942521 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || ||||||||||| || || ||||| ||||| Sbjct 5942522 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 5942581 Query 22339 CAACGTCTTATATTTGCCGG 22358 || |||||||| |||||||| Sbjct 5942582 CAGCGTCTTATCTTTGCCGG 5942601 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| || ||||| ||| || || Sbjct 5941725 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5941784 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 5941785 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5941844 Query 22339 CAACGTCTTATATTTGCCGG 22358 || | ||||| ||||| || Sbjct 5941845 CAGAGACTTATTTTTGCTGG 5941864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| || ||||| ||| || || Sbjct 5943194 ATGCAGATCTTCGTCAAGACATTGACCGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 5943253 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || ||||||||||| || |||||||| ||||| Sbjct 5943254 GACACCATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 5943313 Query 22339 CAACGTCTTATATTTGCCGG 22358 || | ||||| || || || Sbjct 5943314 CAGAGACTTATTTTCGCTGG 5943333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727964191955