Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=13783801 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| ||||| | ||||| || ||||| |||||||||||| | |||||| ||| || Sbjct 5942215 AACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTC 5942156 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| || || || |||| | ||||||||| || || || || ||||| ||||| Sbjct 5942155 GAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTG 5942096 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| ||||| | | ||| || || | || | || || Sbjct 5942095 GATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTT 5942036 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| ||| || || || |||||||| Sbjct 5942035 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | |||||||| || || |||||||| || || || || || || Sbjct 5941200 AACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 5941141 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || ||| ||||||||||||| || || || ||||| ||||| ||||| Sbjct 5941140 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 5941081 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | ||| | ||| |||| | || || |||| ||| | ||||| Sbjct 5941080 GATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTT 5941021 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||||| || || || |||||| Sbjct 5941020 TCCAGTCAACGTTTTGACGAAGATTTGCATG 5940990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134364157284