Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 7e-15 >seq3 Length=13783801 Score = 96.9 bits (106), Expect = 7e-15 Identities = 207/307 (67%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 42513 TTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTC 42572 |||||||| |||||||| ||||| |||||| | || || ||| ||||| | || ||| | Sbjct 4094262 TTCTACGGATTCCAGATTGCCATTGAGAACATTCATTCAGAGATGTACTCGAAGCTGATT 4094203 Query 42573 AACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATG 42632 | || || || | ||| || || ||| || ||||| ||| | || | | Sbjct 4094202 GAGACTTATATTCGTGATGAGACGGAACGAAACACTCTTTTCAACGCCGTTGATGAGTTC 4094143 Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 | ||||||||||||||| |||||||| || |||||| | | | || | | | Sbjct 4094142 GAGTTCATCAAGAAGAAGGCTGACTGGGCTCTTCGCTGGATTTCG-GACAAGAAGGCTTC 4094084 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 ||||| || || || | || || | || || ||||| ||||||||| || | || Sbjct 4094083 GTTCGCTGAAAGACTCATTGCTTTCGCAGCTGTTGAGGGAATCTTCTTCAGTGGATCATT 4094024 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||| || ||||||||||| ||| || | | |||||| ||| | || || || || Sbjct 4094023 CGCTTCGATCTTCTGGCTGAAGAAGCGTGGATTGATGCCAGGATTGACACATTCCAATGA 4093964 Query 42812 ACTCATC 42818 |||||| Sbjct 4093963 GCTCATC 4093957 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCC 42968 ||||||| ||| || |||| ||||| | || ||||| || || | || || || | Sbjct 4093811 ATCATCAAGGACGCTGTGGCCATCGAACAAGAATTCCTGACTGAGGCACTTCCAGTTGAC 4093752 Query 42969 CTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTC 43028 || | ||||||||| || |||| |||||||| ||| |||||||| ||| | Sbjct 4093751 ATGATTGGCATGAACTGTCGTCTTATGTCACAGTACATCGAGTTTGTCGCCGATCATTTG 4093692 Query 43029 CTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAG 43088 || | || | ||| | || ||||| || | || |||||||| |||||| Sbjct 4093691 CTCGTCGAGCTCGGTTGTGACAAGCTTTACAAGTCGAAGAATCCATTCGACTTCATGGAG 4093632 Query 43089 AACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 || |||||| | || || ||||| ||||| ||||||||||| || |||| || || Sbjct 4093631 AATATCTCGATCGACGGAAAGACTAACTTCTTCGAGAAGCGGGTTTCCGAGTATCA 4093576 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 244999 CTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCT 245058 || ||| | || ||| ||||| || || ||||| || || |||| ||||| |||| | Sbjct 9227111 CTCGACTCGCTTCATAAAGAGATCTGGAATCCAAAGAGCAAGGAACAGGTCTCTGGCACG 9227170 Query 245059 CTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCA 245118 | ||| |||| ||||||||||| | || | ||| || |||| ||| ||||||| Sbjct 9227171 TTCCTCTTCCGGTCCAGTGTTCTTGCGGAGAGATACAAACTCGAAGATATCGGCGTGCCA 9227230 Query 245119 GGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 ||||||| ||| | ||| | || || || || ||||| ||||| || || || Sbjct 9227231 TGGCTCCAGGTAAATAGCAAATGCTCCTGGGCGTTTGTTTCCTCCTTGATCAAC 9227284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339117370320