Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 150 4e-31 seq4 93.3 1e-13 >seq3 Length=13783801 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | ||| |||||||||| || || |||||||| || || |||| Sbjct 5943699 TCCTCCGCGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGA 5943640 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||||||| || || | || ||||| || ||||||| ||| || ||| ||| Sbjct 5943639 TAGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGG 5943580 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||| || |||||||||||||| ||||| || || || || | || | ||| || Sbjct 5943579 GATTCCCTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGAC 5943520 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || |||| |||||||||||| |||||||| Sbjct 5943519 CTCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 143 bits (158), Expect = 6e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || | ||||| || || |||||||| || || |||| Sbjct 5942233 TCCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGA 5942174 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || || || | ||| ||||| || ||||||| |||||||||| ||| Sbjct 5942173 GAGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGG 5942114 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || || ||||| || || |||||||| || |||| || | ||| || Sbjct 5942113 GATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAAC 5942054 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || ||||| ||||||| |||||||||||| ||||||||| Sbjct 5942053 CTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005 Score = 143 bits (158), Expect = 6e-29 Identities = 150/196 (77%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| |||||||| | || ||||| ||||| Sbjct 5942425 TTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAA 5942366 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || ||| ||||| |||||||| || ||||| || || || ||||| Sbjct 5942365 GATGAGACGTTGCTGA---TCTGGAGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTCAC 5942309 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || | |||| | ||| |||||||| ||||| ||||| ||| | |||||||| Sbjct 5942308 GTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGATAAGAGTCTT 5942249 Query 288459 GACGAATATCTGCATT 288474 |||||| || |||||| Sbjct 5942248 GACGAAGATTTGCATT 5942233 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || |||||||| ||||| | || || || || || || | ||| ||||| ||||| Sbjct 5942929 TTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAA 5942870 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| || || ||| |||||| |||||||| || ||||| || || |||||||| Sbjct 5942869 GATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATCTTGGCCTTCACGTT 5942810 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || | ||| || ||||||||||| ||||| || || ||||||||||| Sbjct 5942809 CTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTTTCCTGTAAGAGTCTTGAC 5942750 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 5942749 GAAGATCTGCATT 5942737 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| ||| || || |||||||| | ||||||||| |||||| Sbjct 5943156 TCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAG 5943097 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| ||| |||||||||||| || || || || || || ||||| || Sbjct 5943096 ATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTC 5943037 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| ||||| || ||||| ||||| || |||| ||||||||| Sbjct 5943036 TCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACG 5942977 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 5942976 AAGATCTGCAT 5942966 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | || ||||| ||||| || | || ||||| ||||| Sbjct 5941688 TTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 5941629 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | || ||| |||||||||||||||||| || || || || || || || Sbjct 5941628 GATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTAGCCTTGACATT 5941569 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||| ||||| || ||||| ||||| || |||| |||||||| Sbjct 5941568 TTCGATCGTGTCGGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGAC 5941509 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 5941508 GAAGATCTGCAT 5941497 Score = 122 bits (134), Expect = 2e-22 Identities = 179/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 269091 CATAATGGAAGCAGTTACAAACGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTAT 269150 ||| | ||| || || | | |||| |||| ||| | ||| || | ||| | || Sbjct 4093809 CATCAAGGACGCTGTGGCCATCGAACAAGAATTCCTGACTGAGGCACTTCCAGTTGACAT 4093750 Query 269151 GATCGGTATGAA-TGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 ||| || ||||| || || ||| ||| || || ||||| || || || |||| | | Sbjct 4093749 GATTGGCATGAACTGTCG-TCTTATGTCACAGTACATCGAGTTTGTCGCCGATCATTTGC 4093691 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 || | ||||||| ||| || | ||||| ||||||||||| |||| ||| ||||| Sbjct 4093690 TCGTCGAGCTCGGTTGTGACAAGCTTTACAAGTCGAAGAATCCATTCGACTTCATGGAGA 4093631 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTC 269329 || ||| |||| |||||||| ||||||||||| ||||| || ||| |||||||||| Sbjct 4093630 ATATCTCGATCGACGGAAAGACTAACTTCTTCGAGAAGCGGGTTTCCGAGTATCAACGTC 4093571 Query 269330 CTGGTGTAATG 269340 |||| || ||| Sbjct 4093570 CTGGAGTGATG 4093560 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || ||||| |||||||| ||| |||||||||||| || || ||||| || || Sbjct 5942601 CCGGCAAAGATAAGACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCC 5942542 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| ||||| || | ||| | ||| |||||||| ||||| ||||| || |||| | Sbjct 5942541 TTCACATTTTCGATGGTATCAGAGGCTTCGACTTCGAGGGTGATAGTCTTTCCAGTCAAA 5942482 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| Sbjct 5942481 GTCTTCACGAAGATTTGCAT 5942462 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || ||||| || || | ||| ||| ||| |||||||| || || ||||| || || Sbjct 5943333 CCAGCGAAAATAAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCC 5943274 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | ||| | ||| |||||||| ||||| ||||| ||||||| Sbjct 5943273 TTGACATTTTCGATGGTGTCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGGTCAAT 5943214 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| |||||||| Sbjct 5943213 GTCTTGACGAAGATCTGCAT 5943194 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| |||||||| || || ||||| || || || || ||||| || | ||| | ||| Sbjct 5941835 TGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTC 5941776 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 5941775 GACTTCGAGGGTGATGGTCTTTCCGGTCAATGTCTTGACGAAGATCTGCAT 5941725 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | || ||| ||||||||| || || || ||||| || || Sbjct 12978382 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 12978441 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | |||| | || |||||||| || || ||||| || |||||| Sbjct 12978442 TTGACATTCTCAATGGTATCGGAAGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 12978501 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 12978502 GTCTTGACGAAGATTTGCAT 12978521 >seq4 Length=17493829 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| || | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 8989428 CAAGCATCCACATCCGAATTGTATGGAAAAGTTCAAGAGATTCCACAAAGTGAGAAGACT 8989487 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || || ||||| || || || | |||||| ||| |||||| || ||||| | Sbjct 8989488 CCATTCTATCCAAGATCTCCATATGCTGTTGCCAAGATGTACGGGTACTGGATTGTTGTT 8989547 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 || || ||||| | || || |||| || ||||| |||| ||||| || |||||| Sbjct 8989548 AACTATCGTGAAGCCTACAATATGTTTGCTTGCAATGGAATTTTGTTCAACCATGAGAGT 8989607 Query 72597 CCCAACAGAGG 72607 || | ||||| Sbjct 8989608 CCAAGAAGAGG 8989618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654294199746