Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 123 5e-23 seq4 93.3 9e-14 >seq3 Length=13783801 Score = 123 bits (136), Expect = 5e-23 Identities = 217/308 (70%), Gaps = 10/308 (3%) Strand=Plus/Minus Query 243451 CTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA-AACGG-TCAAACAAATCATCA 243508 ||| | || |||||||| || || || || || || | |||| || | | ||||||| Sbjct 4093862 CTTCTCTACTCAAAGCTTCAAAAGAAACT--CACTCAACAACGCATCTACGATATCATCA 4093805 Query 243509 CAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT-ATT 243567 || || || | | |||| | |||||| | || || ||||| | | | | ||| Sbjct 4093804 AGGACGCTGTGGCCATCGAACAAGAATTCCTGACTGAGGCACTTCCA-GTTGACATGATT 4093746 Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT--TCA 243625 |||||||||| | || ||| |||||||||||| || || ||||| | |||| || Sbjct 4093745 GGCATGAACTGTCGTCTTATGTCACAGTACATCGAGTTTGTCGCCGATC--ATTTGCTCG 4093688 Query 243626 TCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCA 243685 ||| ||| |||| ||| || | ||||| || ||||| || || | ||| |||||| | Sbjct 4093687 TCGAGCTCGGTTGTGACAAGCTTTACAAGTCGAAGAATCCATTCGACTTCATGGAGAATA 4093628 Query 243686 TTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTG 243745 | ||| | | || || |||||||||||||| ||||| || || |||||||| |||| Sbjct 4093627 TCTCGATCGACGGAAAGACTAACTTCTTCGAGAAGCGGGTTTCCGAGTATCAACGTCCTG 4093568 Query 243746 GTGTGATG 243753 | |||||| Sbjct 4093567 GAGTGATG 4093560 >seq4 Length=17493829 Score = 93.3 bits (102), Expect = 9e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| || | || || |||||||||||||| ||||| ||||| || | || || ||| Sbjct 8989428 CAAGCATCCACATCCGAATTGTATGGAAAAGTTCAAGAGATTCCACAAAGTGAGAAGACT 8989487 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || || ||||| || || || | |||||| ||| |||||| || ||||| | Sbjct 8989488 CCATTCTATCCAAGATCTCCATATGCTGTTGCCAAGATGTACGGGTACTGGATTGTTGTT 8989547 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 || || ||||| | || || |||| || ||||| |||| ||||| || |||||| Sbjct 8989548 AACTATCGTGAAGCCTACAATATGTTTGCTTGCAATGGAATTTTGTTCAACCATGAGAGT 8989607 Query 68586 CCCAACAGAGG 68596 || | ||||| Sbjct 8989608 CCAAGAAGAGG 8989618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879901085450