Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 >seq3 Length=13783801 Score = 118 bits (130), Expect = 1e-21 Identities = 345/529 (65%), Gaps = 3/529 (1%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||||||||| || || |||| || |||| ||||| || ||||| |||||| Sbjct 9226205 CCACATATCAAATTGAAGCTGTCCTTTCGATACTGGAGATCCTTCGTATGTCGAGTATGG 9226264 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || | | ||| |||||||| | || || || | || |||| || || || || || Sbjct 9226265 TCCATTCAACTCAGCCAATTCACAACTGGCTTCCAATGCAGCGTAGTAGATGGTTTCGAA 9226324 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAA 114282 || || || | | |||| || | ||| || | | || ||| || || Sbjct 9226325 GATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTGAATGGGTAACGCATCAACATGAA 9226384 Query 114283 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 114342 ||| ||||| ||||||||||| || || ||||||||||| | ||||||||| || || Sbjct 9226385 GCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGGCGATGGCGCATATTAGAGTTGCG 9226444 Query 114343 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 114402 ||| ||| || ||||| | || || |||| | |||| | |||| |||| | ||| Sbjct 9226445 AGCCTCCTCGACTGGATAGTAGTTGACGTCAATAATCTTATTCAAATTTCTGGTTATAAC 9226504 Query 114403 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTT 114462 || || | ||| || || || | || |||| |||| | || || Sbjct 9226505 TTTAGTCACCTCAGCCAGTTTGACGAAGTC-GAACT--TTTTCTCGGGGGTCACGTAGCG 9226561 Query 114463 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 114522 | || || || || || || || || || | ||||||| | ||| ||||||||| Sbjct 9226562 ATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTCATCTGGAGCAGAGTACTCTAT 9226621 Query 114523 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 ||||| || ||||| || |||| ||| || || || | || | || || ||||| Sbjct 9226622 GATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAGATTTTGCTGGTTAGACTTGCG 9226681 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||| ||||| |||||||| ||| ||||| ||||| Sbjct 9226682 ATTGGCGGCATCTTTGTAGGTGATGTATGGAAGCCCGGTCTCGATTTGG 9226730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 126077 GAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAA 126136 |||||||| ||||| || || ||||||||| | || |||||||||| |||||| Sbjct 4093955 GAGATGAGCTCATTGGAATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAAG 4094014 Query 126137 ATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGC 126196 |||| | ||||| || ||||||||||||||| ||| ||||| |||| ||| | Sbjct 4094015 ATCGAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCTT 4094074 Query 126197 TCAGCAAAGGA 126207 ||||| || || Sbjct 4094075 TCAGCGAACGA 4094085 Score = 82.4 bits (90), Expect = 9e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 125767 AACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATAAAATCAAA 125826 ||||||||||||||||||||| ||||| ||||| | |||||||||||| || || || Sbjct 4093587 AACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTCCATGAAGTCGAA 4093646 Query 125827 TGGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGACGATCCGAGA 125885 ||| ||||| || || ||| ||| ||| || | || ||| | | |||| | || Sbjct 4093647 TGGATTCTTCGACTTGTAAA-GCTTGTCACAACCGAGCTCGACGAGCAAATGATCGGCGA 4093705 Query 125886 CGTACTCAATGTACTCAGACAT 125907 | |||| ||||||| ||||| Sbjct 4093706 CAAACTCGATGTACTGTGACAT 4093727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353547731560