Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 102 9e-17 seq5 89.7 6e-13 seq4 86.0 7e-12 seq6 84.2 2e-11 >seq3 Length=13783801 Score = 102 bits (112), Expect = 9e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| ||||| | |||||||| | || ||||| || || ||||| || | Sbjct 5942461 ACCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGA 5942402 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| |||||||| ||||| || ||||| || | || Sbjct 5942401 AAGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGG 5942342 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCA 42159 | | ||||||||| ||| | || | | ||| | | | || ||| | ||| | Sbjct 5942341 AATTCCTTCCTTGTCC-TGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGA 5942283 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | |||| |||||||| || || | || ||||| || |||||||||||| Sbjct 5942282 CTTCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCATT 5942233 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | ||||| || | || ||||| || || ||||| |||| | Sbjct 5941217 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5941158 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| ||||| |||||||| || | ||| Sbjct 5941157 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGA 5941098 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||| || ||||| | | | || ||| | ||||| Sbjct 5941097 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACC 5941038 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||| ||||| || || | ||| || || ||||||||||| Sbjct 5941037 TCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||||| || |||||||| | ||||| || | || || |||||||| ||||| || Sbjct 5943663 CTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAA 5943604 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | || ||||| || | ||| | | |||||| ||| |||||| ||||| | Sbjct 5943603 GATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTGGATTTTGGCTTTGACATT 5943544 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| | ||| || |||| ||||||||||| || || | ||||| || Sbjct 5943543 CTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGAC 5943484 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 5943483 GAAGATCTGCAT 5943472 >seq5 Length=20924180 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||||| ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || Sbjct 16648751 TTTATCAAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGC 16648810 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||||| Sbjct 16648811 GGATACTCACCACTATACTACCGAGGA 16648837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 16640658 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 16640599 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 16640598 TCACCACTATACTACCGAGGA 16640578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 16645697 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 16645756 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 16645757 TCACCACTATACTACCGAGGA 16645777 >seq4 Length=17493829 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||| | ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || Sbjct 2801136 TTTGTTAAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGC 2801195 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||||||| Sbjct 2801196 GGATACTCACCACTATACTACCGAGGA 2801222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 15931333 AAAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 15931392 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 15931393 TCACCACTATACTACCGAGGA 15931413 >seq6 Length=17718942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || | Sbjct 8154805 ATCAAAAATATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 8154746 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||||| Sbjct 8154745 TACTCACCACTATACTACCGAGGA 8154722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212752468880