Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 >seq3 Length=13783801 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| ||||| || ||||| |||||||||||| |||| | | | || || Sbjct 5942215 AACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTC 5942156 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || || | |||||||||||||| || ||| || ||||||||||| Sbjct 5942155 GAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTG 5942096 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || || | || ||||| || | ||| || || | ||||| || || Sbjct 5942095 GATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTT 5942036 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || || || || ||||| Sbjct 5942035 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 96.9 bits (106), Expect = 2e-15 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| ||||| || || || |||||||| || || | | |||| || Sbjct 5941200 AACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTC 5941141 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || || ||| | || | |||||| || || |||||||||||||||||| Sbjct 5941140 GAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTG 5941081 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| ||| ||| |||| || |||||| | || || || | ||| || ||||| Sbjct 5941080 GATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTT 5941021 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATT--TGAAATAA 15187 || |||| ||||| || || |||||||| ||| ||||| || Sbjct 5941020 TCCAGTCAACGTTTTGACGAAGATTTGCATGATTGCTGAAAAAA 5940977 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| ||||| || ||||| |||||||| ||| ||| | | ||||||| Sbjct 5943175 AACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTC 5943116 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||| || ||| | || | | ||| || || ||| |||||||||||||| Sbjct 5943115 GAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTG 5943056 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| || ||| | || || ||||| ||| || || | || ||||| || Sbjct 5943055 AATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTT 5942996 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || || |||||| Sbjct 5942995 TCCAGTCAATGTCTTGACGAAGATCTGCATA 5942965 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | |||||| || || || ||||| |||||||||||| ||| | | | || || Sbjct 5943681 AACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTGCGTCCATCCTC 5943622 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | |||||||| || || || ||| ||||| ||||| || Sbjct 5943621 GAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCCTCCTTATCCTG 5943562 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| ||| | || || || || | ||| || || | || |||||||| Sbjct 5943561 GATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAGAGTGATGGTTTT 5943502 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| ||| || || || || |||||| Sbjct 5943501 TCCAGTCAAAGTCTTGACGAAGATCTGCATA 5943471 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| |||||||| || || || || || |||||||| || Sbjct 5942460 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5942401 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | || || |||||| | || | ||| || || || ||| Sbjct 5942400 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGA 5942341 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| ||| ||| || || | || || |||||| ||| || Sbjct 5942340 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACT 5942281 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || | ||||| || || || |||||||| Sbjct 5942280 TCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCAT 5942234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391969509995