Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 102 8e-17 >seq3 Length=13783801 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 47437 AGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACC 47496 |||||||||| ||||||||||| | ||||||| |||| | | |||| ||||| Sbjct 4093720 AGTACATCGAGTTTGTCGCCGATCATTTGCTCGTCGAGCTCGGTTGTGACAAGCTTTACA 4093661 Query 47497 ACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTT 47556 | | ||||||||||||| || ||| | || || ||| |||| || ||||| ||||| | Sbjct 4093660 AGTCGAAGAATCCATTCGACTTCATGGAGAATATCTCGATCGACGGAAAGACTAACTTCT 4093601 Query 47557 TCGAGAAGCGCGTCGGCGAATATAAACGT 47585 |||||||||| || ||| ||| ||||| Sbjct 4093600 TCGAGAAGCGGGTTTCCGAGTATCAACGT 4093572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || || || || ||||| || || ||||| || || Sbjct 5941199 ACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCCTCG 5941140 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| ||| |||| | ||||||||||| || || || || |||||||| | Sbjct 5941139 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGG 5941080 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || |||| | ||||| ||| || | | ||| || || | ||| | ||||| Sbjct 5941079 ATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTTTTT 5941020 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||||| || || || |||||| Sbjct 5941019 CCAGTCAACGTTTTGACGAAGATTTGCATG 5940990 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| ||||||||| |||||||| || || || ||||||||||| ||| || | Sbjct 12978382 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 12978441 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | || | ||| || | | ||||||||||| ||| | || || || |||||| Sbjct 12978442 TTGACATTCTCAATGGTATCGGAAGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 12978501 Query 127094 GTTTTTACAAAAATCTGCATGGCT 127117 || || || || || |||||| || Sbjct 12978502 GTCTTGACGAAGATTTGCATGACT 12978525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500758393680