Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 >seq3 Length=13783801 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||||||||| || | | || ||||| || || || ||||||||||| || |||||| Sbjct 5943699 TCCTCCGCGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGA 5943640 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| || | || ||||| || | ||||| |||||||| || || || Sbjct 5943639 TAGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGG 5943580 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| || ||||| ||||| || | |||||| |||| ||||| Sbjct 5943579 GATTCCCTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGAC 5943520 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | ||||| || || | ||| || || || || ||||| Sbjct 5943519 CTCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| | ||| || ||||||||||| |||||||| || || Sbjct 5942967 ATACCTCCTCTGAGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCC 5942908 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| ||||| ||| | ||||| |||||||| || || Sbjct 5942907 GAAAGGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGT 5942848 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| ||||| || || || | || | || | ||||| |||| || Sbjct 5942847 GGGATACCTTCTTTGTCTTGGATCTTGGCCTTCA-CGTTCTCAATAGTGTCAGAAGCTTC 5942789 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || || || ||||| || || || || ||||| Sbjct 5942788 CACCTCGAGCGTGATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCAT 5942738 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | | || | ||| || || || ||||||||||| || |||||| Sbjct 5942235 ATTCCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCG 5942176 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || ||| || | ||| ||||| || | ||||| || || || || || Sbjct 5942175 GAGAGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGT 5942116 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| || || || | || | || | ||||| |||| || Sbjct 5942115 GGGATACCTTCCTTGTCTTGGATCTTGGCCTTCA-CGTTCTCAATAGTGTCAGAAGCTTC 5942057 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || ||||| | ||| || || || || ||||| Sbjct 5942056 AACCTCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 5942006 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||||| |||||| || || || || || || || ||||| || || Sbjct 12978382 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCC 12978441 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||| ||||||| |||||||||||| |||| || || || || ||| Sbjct 12978442 TTGACATTCTCAATGGTATCGGAAGCCTCGACTTCGAGGGTAATAGTCTTACCCGTCAGA 12978501 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || || || |||||||| Sbjct 12978502 GTCTTGACGAAGATTTGCAT 12978521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003160449720