Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 120 4e-22 >seq3 Length=13783801 Score = 120 bits (132), Expect = 4e-22 Identities = 346/530 (65%), Gaps = 3/530 (1%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||||||||| || || |||| || |||| ||||| || ||||| |||| Sbjct 9226204 CCCACATATCAAATTGAAGCTGTCCTTTCGATACTGGAGATCCTTCGTATGTCGAGTATG 9226263 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | || | | ||| |||||||| | || || || | || |||| || || || || | Sbjct 9226264 GTCCATTCAACTCAGCCAATTCACAACTGGCTTCCAATGCAGCGTAGTAGATGGTTTCGA 9226323 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAA 116242 | || || || | | |||| || | ||| || | | ||| ||| || | Sbjct 9226324 AGATTCGTTTGTTGAGATCTCTGGCTTCTGCCGAAGTGAATGGGTAACGCATCAACATGA 9226383 Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 116302 | ||| ||||| ||||||||||| || || ||||||||||| | ||||||||| || | Sbjct 9226384 AGCAATCAGCGAGTCCTTGGACACCAAGCCCGATTGGGCGATGGCGCATATTAGAGTTGC 9226443 Query 116303 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 116362 |||| ||| || ||||| | || || |||| | |||| | |||| |||| | || Sbjct 9226444 GAGCCTCCTCGACTGGATAGTAGTTGACGTCAATAATCTTATTCAAATTTCTGGTTATAA 9226503 Query 116363 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 116422 | || || | ||| || || || | || |||| |||| | || || Sbjct 9226504 CTTTAGTCACCTCAGCCAGTTTGACGAAGTC-GAACT--TTTTCTCGGGGGTCACGTAGC 9226560 Query 116423 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 116482 | || || || || || || || || || | ||||||| | ||| |||||||| Sbjct 9226561 GATTGAGAGCAATGGAAGCAAGGTTGCAAACTGCAATCTCATCTGGAGCAGAGTACTCTA 9226620 Query 116483 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 116542 | ||||| || ||||| || |||| ||| || || || | || | || || ||||| Sbjct 9226621 TGATTTCAGTGCACAAGTTGGAACACTTGATAGTTCCAAGATTTTGCTGGTTAGACTTGC 9226680 Query 116543 TGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||| |||||| || ||||| ||| ||||| ||||| Sbjct 9226681 GATTGGCGGCATCTTTGTAGGTGATGTATGGAAGCCCGGTCTCGATTTGG 9226730 Score = 113 bits (124), Expect = 6e-20 Identities = 297/445 (67%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 115623 |||||||| || |||||||| |||| |||||| | || | ||||||||| | | | Sbjct 9225657 TAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGATACCG 9225716 Query 115624 GAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 115683 | | |||| | ||||| | ||| | | |||||||||||| ||| | ||| Sbjct 9225717 GCGTAGCTTGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCA 9225776 Query 115684 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAGG 115743 ||||| || ||||| ||||| | || || ||| |||||||| || | || || Sbjct 9225777 CGATCAGCAGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGT 9225836 Query 115744 TTCTTAATATCATCTGGGATATCCA-CGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | ||| || || ||| || |||| | || ||||| || || ||| || ||| | || Sbjct 9225837 TCCTTGATGTCGGATGGAAT-TCCATCAATGTTTTGAATGGATCCAT-TG--TTGGCAAT 9225892 Query 115803 GAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 ||| | |||||| || | | ||| | || | | | | ||||| | | ||| Sbjct 9225893 CAGACGATTCTTCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTG 9225952 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGT 115918 ||| |||| || || || | || || | ||| |||||||| | |||| Sbjct 9225953 AGGATTCACAATCTGGAAATCTCCAGAAAGAACACGGCG-AGAGTAGATGTTCGAAGTGT 9226011 Query 115919 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 ||||||| | | | |||||||| || | ||||| || ||||| || || ||||| || | Sbjct 9226012 ATGGCTCGATGGATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAG 9226071 Query 115979 CCATGAGAAGGCTGTTGCGGAGACC 116003 |||| ||||| |||||||||| ||| Sbjct 9226072 CCATCAGAAGACTGTTGCGGATACC 9226096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 127241 ACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAAT 127300 |||||||||||||||||||| ||||| || |||| |||||||||||| || || ||| Sbjct 4093588 ACCCGCTTCTCGAAGAAGTTAGTCTTTCCGTCGATCGAGATATTCTCCATGAAGTCGAAT 4093647 Query 127301 GGGTTCTTTGAGTTCCAAATTGTTGGCAC-CCCAATCTGTTTGAGGAGACGATCCGAGAC 127359 || ||||| || || ||| ||| ||| || | || ||| | | |||| | ||| Sbjct 4093648 GGATTCTTCGACTTGTAAA-GCTTGTCACAACCGAGCTCGACGAGCAAATGATCGGCGAC 4093706 Query 127360 GTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCGC 127419 |||| ||||||| ||||| | ||||||| || || | || | ||| || || Sbjct 4093707 AAACTCGATGTACTGTGACATAAGACGACAGTTCATGCCAATCATGTCAACTGGAAGTGC 4093766 Query 127420 GTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCC 127456 || | ||| | | || ||| ||||||| ||| Sbjct 4093767 CTCAGTCAGGAATTCTTGTTCGATGGCCACAGCGTCC 4093803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507146318120