Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 >seq3 Length=13783801 Score = 118 bits (130), Expect = 2e-21 Identities = 325/494 (66%), Gaps = 8/494 (2%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||| ||||| ||||| |||| || || || || ||| || | | || ||||||||| | Sbjct 9225607 TCTTATCCACAGTGAATTGAACTGCATTGACAGCTGGCTTGGTACGCAAATAGTACATTC 9225666 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG- 203956 | ||||| || ||||||| ||| ||||| | ||||| || | | | | ||| | Sbjct 9225667 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAATGCATTGATGTGA---TACCGGCGTAGC 9225723 Query 203957 --GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 || | ||||||||||||||| ||||| ||| ||| || ||| | | | ||||| | Sbjct 9225724 TTGGCTTGGCCATGTGAATGTTAAGAGATTGGGATTGATCAATGTATGCTCCACGATCAG 9225783 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 | ||||| | |||||| || || || ||||||||||| || | | || || Sbjct 9225784 CAGCCATCTCAATAATGTCTTTTTGAGAGATCTCCCACACTGTGCGATAAAGTTCCTTGA 9225843 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATC 204133 ||| || | | || | | || || || || || |||| ||| ||||| | || Sbjct 9225844 TGT-CGGATGGAATTCCATCAATGTTTTGAATGGATCCATTGTTGGCAATCAGACGATTC 9225902 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || |||| || ||||| || | || ||| | || ||| || || | Sbjct 9225903 TTCATCTCATCAGTCCACAATCCTCTTTCCACCAAATCCTTGAGCATGTGAGGATTCACA 9225962 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 ||||| || ||||| || || || | || | | | | ||| ||| |||| |||| Sbjct 9225963 ATCTGGAAATCTCCAGAAAGAACACGGCGAGAGTAGATGTTCGAAGTGTATGGCTCGATG 9226022 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 | || ||||| |||| ||| ||||| ||| || || ||||| ||||||| || || Sbjct 9226023 GATTCATTGTTTCCGAGAATTTGAGCAGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGA 9226082 Query 204314 GAGTTGCGCACACC 204327 |||||| | ||| Sbjct 9226083 CTGTTGCGGATACC 9226096 Score = 87.8 bits (96), Expect = 3e-12 Identities = 207/310 (67%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 159956 GAGATGAACTCGTTGGACATGA-TGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAA 160014 ||||||| ||| ||||| ||| | | || ||||| | |||||| || ||||| || Sbjct 4093955 GAGATGAGCTCATTGGA-ATGTGTCAATCCTGGCATCAATCCACGCTTCTTCAGCCAGAA 4094013 Query 160015 AATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCT 160074 || | || || | || || || ||||| ||||| || || || || || | ||| || Sbjct 4094014 GATCGAAGCGAATGATCCACTGAAGAAGATTCCCTCAACAGCTGCGAAAGCAATGAGTCT 4094073 Query 160075 CTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGC 160134 ||| | || || || || |||| |||| | ||||| ||||||||||| Sbjct 4094074 TTCAGCGAACGAAGCCTTCTTGTCCGAAATCCAGCGAAGAGCCCAGTCAGCCTTCTTCTT 4094133 Query 160135 GATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGAT 160194 |||| || | || |||||||| || | ||| | ||| || |||| || Sbjct 4094134 GATGAACTCGAACTCATCAACGGCGTTGAAAAGAGTGTTTCGTTCCGTCTCATCACGAAT 4094193 Query 160195 CAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAA 160254 ||| ||||||||||||||||||| |||| || | || || ||||| ||||| || Sbjct 4094194 ATAAGTCTCAATCAGCTTCGAGTACATCTCTGAATGAATGTTCTCAATGGCAATCTGGAA 4094253 Query 160255 GTTGTAGAAA 160264 ||||||| Sbjct 4094254 TCCGTAGAAA 4094263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155130423920