Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 131 4e-25 >seq3 Length=13783801 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || ||||| |||| ||||||||| | | || | || ||||| |||||| Sbjct 5942436 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCGAGCTGC 5942377 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| |||||||||||||| ||||| || ||| ||||||||| ||||||||||| Sbjct 5942376 TTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGAATCTTG 5942317 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| |||| ||| || | | ||| || || | ||||| ||||| || | Sbjct 5942316 GCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCGATA 5942257 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| Sbjct 5942256 AGAGTCTTGACGAAGATTTG 5942237 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || ||||| |||| ||||||||||| || || | || || Sbjct 5941202 AGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCGTCC 5941143 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||||||||||||||| || || ||||||||| || Sbjct 5941142 TCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 5941083 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || ||||| ||| || | | || || |||| ||||| || Sbjct 5941082 TGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACCTCCAGGGTGATAGTT 5941023 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || || ||||| Sbjct 5941022 TTTCCAGTCAACGTTTTGACGAAGATTTG 5940994 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| ||||||||| | | || | || ||||| || || Sbjct 5943168 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGT 5943109 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||||||||||||||| | |||||| || || |||||||| || |||||||| Sbjct 5943108 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGAATCTTG 5943049 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| |||| ||| || | | ||| || || | ||||| ||||| || || Sbjct 5943048 GCCTTCACATTCTCGATGGTATCAGAGGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5942989 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || || || || || Sbjct 5942988 AATGTCTTGACGAAGATCTG 5942969 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || ||||| |||| ||||||||| | | || | || || || |||||| Sbjct 5941699 TGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGC 5941640 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| || | ||||| || || ||||||||| || |||||||| Sbjct 5941639 TTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTA 5941580 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| ||||| | | ||| || || | ||||| ||||| || || Sbjct 5941579 GCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACTTCAAGTGTGATGGTCTTTCCAGTC 5941520 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || || || || || Sbjct 5941519 AATGTCTTGACGAAGATCTG 5941500 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || ||||| |||| |||||||| | | || | ||||| || || ||| Sbjct 5942940 TGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAAAGGGTACGGCCATCCTCGAGTTGC 5942881 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||||||||| | || ||||| || || || |||||| || || ||||| Sbjct 5942880 TTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGGATCTTG 5942821 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| || | ||||| | | ||| || || | |||||| ||||| || || Sbjct 5942820 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACCTCGAGCGTGATGGTCTTTCCTGTA 5942761 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || Sbjct 5942760 AGAGTCTTGACGAAGATCTG 5942741 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || |||||||||||||||| |||||| || | | ||| Sbjct 5943692 CGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGATAGAGTG 5943633 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || ||||||||||| || ||||| | ||| ||||| || || ||||| Sbjct 5943632 CGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGGATTCCC 5943573 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || || || || | |||||| | | ||| || || | Sbjct 5943572 TCCTTATCCTGGAT-TTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACCTCGAG 5943514 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| || || || || || Sbjct 5943513 AGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTG 5943475 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| ||||||||||||| |||||| || | | ||| | ||||| || || ||| Sbjct 5942208 TGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAGAGAGTACGGCCATCCTCGAGTTGC 5942149 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 |||||||| ||||| | |||||| || || || || ||||| || || ||||| Sbjct 5942148 TTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTGTCTTGGATCTTG 5942089 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| || | ||||| | | ||| || || | || || ||||| || || Sbjct 5942088 GCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACCTCAAGAGTAATAGTCTTTCCGGTC 5942029 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||| || || || || || Sbjct 5942028 AAAGTCTTGACGAAGATCTG 5942009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921494265469