Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 >seq3 Length=13783801 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| || | ||| ||||| ||||| |||||||| || Sbjct 5941217 CCTCCTCTAAGACGAAGAACCAAGTGAAGAGTAGATTCCTTCTGGATGTTGTAGTCAGAC 5941158 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| |||||||| || | |||||||| || | || Sbjct 5941157 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCTGGTGGA 5941098 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| |||| | | | || ||| | ||||| Sbjct 5941097 ATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATTTTCGATGGTATCGGAAGCCTCCACC 5941038 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 5941037 TCCAGGGTGATAGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 5940991 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | ||||| ||| | || ||||| |||||||||||||| || Sbjct 5942964 CCTCCTCTGAGACGGAGCACCAAATGGAGGGTTGATTCCTTCTGGATATTGTAGTCCGAA 5942905 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || ||||| ||||| |||||||| |||||||| ||||| || | || Sbjct 5942904 AGGGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGG 5942845 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| ||| | || | | ||||| | |||||| Sbjct 5942844 ATACCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCCACC 5942785 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||||||| || || || || || || || ||||| |||||| Sbjct 5942784 TCGAGCGTGATGGTCTTTCCTGTAAGAGTCTTGACGAAGATCTGCATT 5942737 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||| | ||| |||||||||||| ||||| |||||| Sbjct 5943698 CCTCCGCGAAGACGAAGAACGAGATGAAGTGTCGACTCCTTTTGGATGTTGTAATCGGAT 5943639 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || ||||||||||| || || || ||||| || ||||| || | || Sbjct 5943638 AGAGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGTGGG 5943579 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| ||| || |||| || | | ||||| | ||| || Sbjct 5943578 ATTCCCTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATGGTGTCCGAAGCTTCGACC 5943519 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || |||| || || || ||||| ||||| Sbjct 5943518 TCGAGAGTGATGGTTTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 5943472 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| ||| | || ||||| ||||| |||||||| || Sbjct 5942460 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5942401 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| || ||||| || | || ||||| || | || Sbjct 5942400 AGGGTGCGGCCGTCTTCGAGCTGCTTTCCAGCGAAGATGAGACGTTGCTGATCTGGAGGA 5942341 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||||| ||| | || | | || ||| | ||| || Sbjct 5942340 ATTCCTTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGCTTCGACT 5942281 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||| || || | || || || || |||||||||||| Sbjct 5942280 TCGAGGGTGATGGTCTTTCCGATAAGAGTCTTGACGAAGATTTGCATT 5942233 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||| | |||| ||| | ||| |||||||||||| ||||| ||||| Sbjct 5942232 CCTCCTCGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAATCGGAG 5942173 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || ||||| ||||| ||||| || ||||| ||||| || || | || Sbjct 5942172 AGAGTACGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAAACGCTGTTGATCTGGTGGG 5942113 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| |||||| ||| | || | | ||||| | ||| || Sbjct 5942112 ATACCTTCCTTGTCTTGGATCTTGGCCTTCACGTTCTCAATAGTGTCAGAAGCTTCAACC 5942053 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || || || || |||| || || || ||||| |||||| Sbjct 5942052 TCAAGAGTAATAGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 5942005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | |||| ||| | || ||||| ||||| |||||||| || Sbjct 5941723 CCTCCTCTCAAACGGAGAACCAAATGAAGAGTTGATTCCTTCTGGATGTTGTAGTCCGAA 5941664 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| ||||||||||| |||||||| || | | ||||| || | || Sbjct 5941663 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGTCTTTGCTGATCTGGTGGG 5941604 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || || || ||||| ||||| | | | ||||||| | ||| || Sbjct 5941603 ATTCCTTCTTTATCTTGAATCTTAGCCTTGACATTTTCGATCGTGTCGGAAGCTTCGACT 5941544 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || |||| || || || ||||| ||||| Sbjct 5941543 TCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5941497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | |||| ||| | ||| |||||||||||| ||||||||||| Sbjct 5943192 CCTCCTCTCAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 5943133 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| ||||| || || |||||||| || | | |||||| || | || Sbjct 5943132 AGGGTACGACCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGG 5943073 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| ||||| ||| | || | | || || | ||| || Sbjct 5943072 ATTCCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCTTCGACT 5943013 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| || || |||| || || || ||||| ||||| Sbjct 5943012 TCAAGTGTGATGGTCTTTCCAGTCAATGTCTTGACGAAGATCTGCAT 5942966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238350541640