Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20elegans_20[refseq_20GCF_5F000002985.6_202013-02-07] 7 sequences; 100,286,401 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 138 1e-27 >seq3 Length=13783801 Score = 138 bits (152), Expect = 1e-27 Identities = 688/1086 (63%), Gaps = 71/1086 (7%) Strand=Plus/Minus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 |||| |||||| || ||||| || |||||||| ||| || | ||| ||| Sbjct 9226729 CAAATCGAGACCGGGCTTCCATACATCACCTACAAAGATGCCGCCAATCGCAAGTCTAAC 9226670 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 || | ||| | || |||||| |||||||| | || || |||||| | || | | Sbjct 9226669 CAGCAAAATCTTGGAACTATCAAGTGTTCCAACTTGTGCACTGAAATCATAGAGTACTCT 9226610 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 | |||||||| || || || ||||| || || || |||||| || ||| Sbjct 9226609 GCTCCAGATGAGATTGCAGTTTGCAACCTTGCTTCCATTGCTCTCAATCGCTACGTGACC 9226550 Query 112479 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 || |||| |||| || || | | ||||| || || || ||| | | || | | Sbjct 9226549 CCCGAGAAAAAG---TTCGACTTCGTCAAACTGGCTGAGGTGACTAAAGTTATAACCAGA 9226493 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 112598 || | || | ||||||| || | || || || ||| ||||| || |||||| Sbjct 9226492 AATTTGAATAAGATTATTGACGTCAACTACTATCCAGTCGAGGAGGCTCGCAACTCTAAT 9226433 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT 112658 ||| | || || ||||| || || ||||||||||| ||||| ||| ||||| | Sbjct 9226432 ATGCGCCATCGCCCAATCGGGCTTGGTGTCCAAGGACTCGCTGATTGCTTCATGTTGATG 9226373 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 || || |||| ||| | ||||| | || |||| || || || || || || Sbjct 9226372 CGTTACCCATTCACTTCGGCAGAAGCCAGAGATCTCAACAAACGAATCTTCGAAACCATC 9226313 Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 || |||| || | || || |||| || ||||| ||| | |||| ||||| || Sbjct 9226312 TACTACGCTGCATTGGAAGCCAGTTGTGAATTGGCTGAGTTGAATGGACCATACTCGACA 9226253 Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACC 112838 | || || ||||||| || |||| |||||||||||||||||||| | || | || Sbjct 9226252 TACGAAGGATCTCCAGTATCGAAAGGACAGCTTCAATTTGATATGTGGGGA-GTCACTCC 9226194 Query 112839 AAGC-TTCACTACGACTGGGACGCTCT---CAAGGAA----------------------- 112871 || | ||| | ||| |||| | |||| |||| || Sbjct 9226193 AACCGATCAATGCGATTGGGCCACTCTTCGCAAGAAAATTGCAAAGTAAGATTAAAATAC 9226134 Query 112872 -----CGCATC------AAGGA-----------GAAGGGTCTTCGTAACAGTCTTTTGAT 112909 || ||| || | | | ||| | || ||||||||| |||| Sbjct 9226133 TCTTTCGAATCTGATTAAACTACTTATTTACAGGCATGGTATCCGCAACAGTCTTCTGAT 9226074 Query 112910 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 112969 ||| ||||||||||| || ||||| || ||||| | || || ||||||| | | || || Sbjct 9226073 GGCTCCAATGCCAACTGCTTCCACTGCTCAAATTCTCGGAAACAATGAATCCATCGAGCC 9226014 Query 112970 CTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA-- 113026 ||||| |||||||||| ||| | | || | ||||| || |||||| || Sbjct 9226013 ATACACTTCGAACATCTACTCT-CGCCGTGTTCTTTCTGGAGATTTCCAGATTGTGAATC 9225955 Query 113027 CAAGCAT-CTCGTGGATGACCT-CAAAGA-GATTGGTCTCTGGTCCAAGGATATGAAGGA 113083 | ||| ||| |||| | ||||| ||||| ||| | | || |||||| | Sbjct 9225954 CTCACATGCTCAAGGATTTGGTGGAAAGAGGATTG-----TGGACTGATGAGATGAAGAA 9225900 Query 113084 TC-TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTG-TGGATATTCCAGATGAAATT 113141 || || || | | ||| ||||||||||| |||| |||| |||||| || || Sbjct 9225899 TCGTCTGATTGCCAAC-AATGGATCCATTCAAAACATTGATGGA-ATTCCATCCGACATC 9225842 Query 113142 AAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCA 113201 ||| | | || |||||||| ||||| ||| || || | ||||| ||||| || Sbjct 9225841 AAGGAACTTTATCGCACAGTGTGGGAGATCTCTCAAAAAGACATTATTGAGATGGCTGCT 9225782 Query 113202 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-AAAGTCCAAC 113260 |||||||| | |||||||||| ||| | | || | ||||| ||| | | | Sbjct 9225781 GATCGTGGAGCATACATTGATCAATCCCAATCTCTTAACATTCACATGGCCAAGCCAAGC 9225722 Query 113261 GATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGAT 113320 | | || || | || ||||| | ||| | ||||||||||| ||||| || || || Sbjct 9225721 TACG-CCGGTATCACATCAATGCATTTCTACGGATGGAAGAAGGGACTCAAGACTGGAAT 9225663 Query 113321 GTATTA 113326 ||| || Sbjct 9225662 GTACTA 9225657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742345685040